Bioconductor Source

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oligo source Install

7 months ago • updated 6 months ago Guido Hooiveld ★ 4.1k

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Source flowCore Repository git

updated 20 months ago by shepherl 4.1k • written 20 months ago by dominic.r • 0

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biocinstaller installation install source conda

updated 8.4 years ago by Martin Morgan 25k • written 8.4 years ago by jol.espinoz ▴ 40

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biocinstaller source

9.1 years ago michel.renou • 0

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security http source installation

updated 9.6 years ago by Dan Tenenbaum ★ 8.2k • written 9.6 years ago by will.townes • 0

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edgeR rpkm source code

updated 9.7 years ago by Martin Morgan 25k • written 9.7 years ago by thibault.lorin ▴ 10

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Comment: minfi latest update for EPIC V2 chip by macdonaldfrench7286566 • 0

Yes, the most updated analysis for the EPIC V2 chip using the minfi package still involves using the annotations provided by jokergoo. *Th…

Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k

To compute CPM values from edgeR: ``` y <- DGEList(counts = counts, samples = samples, genes = genes, group = samples$Disease_status) y <- …

Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Gordon Smyth 52k

Follow the vignette. It explains how to call edgeR's cpm function to use the offsets.

Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Andre • 0

But if i want to do another type of analysis like Wilcoxon/Mann-Whitney and want to incorporate salmon offset can i simply use the cpm func…

Comment: DESeq error: counts matrix should be numeric, currently it has mode: character by Kucsera • 0

After applying your suggestion, the following error pops up: ``` Error in mde(x) : 'list' object cannot be coerced to type 'double' ```

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A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

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