Bioconductor Silhouette Plot

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scRNA-Seq RNA-Seq Clustering Silhouette Plot

updated 6.0 years ago by Aaron Lun ★ 28k • written 6.0 years ago by hamza_karakurt ▴ 60

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Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

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Thanks James!

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Answer: Unable to install nloptr

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