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SequencingData
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News:
Course Manipulation of NGS Data for Genomic and Population Genetics Analyses
sequencing
Sequencing
SequencingData
12 months ago
communication
• 0
1
vote
1
reply
1.1k
views
Library sizes of miRNA sequencing data and TMM normalization with Edge-R
edgeR
SequencingData
miRNA
TMM
Normalization
updated 2.2 years ago by
Gordon Smyth
52k • written 2.2 years ago by
tleona3
• 0
0
votes
0
replies
830
views
Analysis of TIF-seq data to generate transcription start sites (TSS) and poly(A) site (PAS) clusters
Transcriptomics
SequencingData
2.4 years ago
Rom
• 0
0
votes
2
replies
1.0k
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R/Bioconductor package for Circulating Cell-Free DNA data analysis
SequencingData
3.5 years ago • updated 3.4 years ago
adR
▴ 40
0
votes
3
replies
1.5k
views
package for ATACseq data analysis
SequencingData
ATACSeq
ATACseqQC
updated 2.6 years ago by
Rory Stark
★ 5.2k • written 3.5 years ago by
adR
▴ 40
0
votes
0
replies
876
views
Do you know a sofware to draw pedigrees + haplotypes?
SequencingData
STR
MutationalPatterns
pedigree
HapMap
3.7 years ago
Negar
• 0
6 results • Page
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Comment: Model performance for spline modelling of RNA-seq timecourses in edgeR
by
skiaphrene
▴ 10
Dear Gordon, Thank you very much for your prompt reply. I agree with the limma/edgeR perspective of including all potentially explanatory…
Comment: how to use `arrayWeightsQuick()`?
by
Gordon Smyth
52k
What sort of object is `expression`? Does it contain any missing values?
Answer: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
by
shocked.tick.zyet
• 0
Dealing with those adjusted p-values in ChAMP can feel like a frustrating game of [Uno Online](https://unoonlinefree.com) , especially when…
Comment: DESeq2 lfcShrink drastic shrinkage
by
Nick
• 0
Did you ever figure out the cause of this? I am seeing very similar results and wondering if you have advice on how you may have resolved t…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
Luca
• 0
Thanks for your time on this, I have also never seen anything quite like this before neither. The only confounding variable I received in t…
Votes
Modelling gene program dynamics across time with {lemur}
A: DESeq2 one group vs multiple groups comparison in presence of batch effect
Comment: BiocParallel_1.40.1.tar.gz not available
Comment: BiocParallel_1.40.1.tar.gz not available
Limma outputs different results for same sample?
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Gordon Smyth
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