Bioconductor SequencingData

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sequencing Sequencing SequencingData

12 months ago communication • 0

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1.1k

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edgeR SequencingData miRNA TMM Normalization

updated 2.2 years ago by Gordon Smyth 52k • written 2.2 years ago by tleona3 • 0

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Transcriptomics SequencingData

2.4 years ago Rom • 0

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SequencingData

3.6 years ago • updated 3.5 years ago adR ▴ 40

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SequencingData ATACSeq ATACseqQC

updated 2.7 years ago by Rory Stark ★ 5.2k • written 3.6 years ago by adR ▴ 40

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SequencingData STR MutationalPatterns pedigree HapMap

3.8 years ago Negar • 0

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Comment: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an by James W. MacDonald 68k

Have you figured out how to do this using tidy grammar? Using non-tidy grammar is quite simple, and perhaps you already know how to do that…

Comment: How can I correctly use phyloseq with Docker? by James W. MacDonald 68k

You can use [bioc-run][1] to simplify things as well. [1]: https://github.com/Bioconductor/bioc-run/tree/devel

Comment: How can I correctly use phyloseq with Docker? by James W. MacDonald 68k

You show how you modified the container, but not how you are running it, which is the critical part.

Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply. > Per sample all counts are scaled by the same size factor so I strongly assume that something was parsed here …

Comment: Discrepancies in normalised count data vs unnormalised by ATpoint ★ 4.8k

Please show examples using `plotCounts()`. Custom spreadsheets harbor the risk of parsing errors along the way which very often explains wh…

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Answer: How to combine two DESeq2 objects (dds) for analysis

How to combine two DESeq2 objects (dds) for analysis

How can I correctly use phyloseq with Docker?

A: DESeq2::sizeFactors() function does not output the sizeFactor table.

Comment: Filtering after DESeq

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