Bioconductor ScanVcfParam

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VariantAnnotation subset ScanVcfParam

updated 5.0 years ago by Martin Morgan 25k • written 5.0 years ago by Dario Strbenac ★ 1.6k

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variantannotation vcf readvcf filtervcf scanvcfparam

7.7 years ago Didi ▴ 10

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R variantannotation vcf scanvcfparam readvcf

updated 8.9 years ago by Michael Lawrence ★ 11k • written 8.9 years ago by emily.mccann • 0

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VariantAnnotation filterVcf ScanVcfParam vcf writeVcf

updated 9.7 years ago by Martin Morgan 25k • written 9.7 years ago by pau.puigdevall • 0

4 results • Page 1 of 1

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Comment: Filtering after DESeq by caroline.zanchi • 0

... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…

Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0

Hi. I am having the same issue, and haven't found a solution still.

Comment: Feature Counts - potential bug with outfile.jcounts by Tom • 0

[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…

Comment: Filtering after DESeq by caroline.zanchi • 0

I am going to try this right now, thanks !

Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0

This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/

Votes

Answer: CluserProfiler message "No gene can be mapped"

A: Minfi issue: return code from pthread_create() is 22

Comment: Filtering after DESeq

Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

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