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SVD
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error in champ.SVD
svd
methylation
champ
updated 14 months ago by
shepherl
3.9k • written 14 months ago by
Giulia
• 0
0
votes
0
replies
390
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Distance between columns vs distance between rows and SVD
distance
svd
17 months ago
Lenny186
• 0
0
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2
replies
1.7k
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Some terms in EPIC Methylation Analysis
ChAMP
SVD
Array
Slide
Sample Plate
updated 5.7 years ago by
Yuan Tian
▴ 290 • written 5.7 years ago by
yuabrahamliu
• 0
4
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5
replies
2.9k
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SVA and proportion of variance explained
sva
svd
explained variance
pca
updated 7.7 years ago by
Jeff Leek
▴ 650 • written 7.7 years ago by
Mattia
▴ 10
0
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1
reply
2.0k
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News:
Bug in ChAMP package champ.SVD() function
champ
methylation
450k
SVD
EPIC
News
7.8 years ago
Yuan Tian
▴ 90
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Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Answer: LRT test for different timepoints (one tissue types vs. many tissue types)
by
Michael Love
42k
No, this is a contrast of estimated coefficient (e.g. the Wald test).
Comment: Ranking the GSEA Results
by
Michael Love
42k
Got it. So then I'll take off DESeq2 as its mostly a downstream question. You may need to direct the fgsea developer to the thread. When yo…
Comment: Ranking the GSEA Results
by
V_Vibes
• 0
I have actually used the "fgsea" Bioconductor package which is used for GSEA. Thanks for pointing that out. I have edited that in the origi…
Comment: Ranking the GSEA Results
by
V_Vibes
• 0
The idea was inspired by people ranking the DEGs for preranked GSEA using their log2FC * (-log10 p-value). Also, the GSEA results I am gett…
Votes
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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