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SRAdb
•
reset
1
vote
3
replies
3.9k
views
SRAdb: Error downloading sqlite files
sradb
written 7.5 years ago by
arielle
• 0
0
votes
2
replies
1.4k
views
getSRAdbFile() does not work
SRAdb
GEOmetadb
2.7 years ago • updated 2.6 years ago
jfertaj
▴ 30
0
votes
0
replies
878
views
Best straightforward way from SRA-fastq to Phyloseq Object
SRAdb
3.7 years ago
Davide
• 0
7
votes
5
replies
6.9k
views
Tutorial:
Accessing Public Genomic Data from Bioconductor
geoquery
geometadb
sradb
Tutorial
written 9.9 years ago by
Sean Davis
21k
0
votes
3
replies
1.4k
views
getSRA() from the SRAdb package is returning an empty data.frame from the full SQL file, but not the demo file
SRAdb
getSRA()
updated 4.6 years ago by
James W. MacDonald
68k • written 4.6 years ago by
mac54
• 0
0
votes
0
replies
1.3k
views
listSRAfile: Error in if (is.na(sra_acc$run[i])) { : argument is of length zero
SRAdb
5.0 years ago
Aditya
▴ 160
0
votes
0
replies
1.2k
views
Query based on PMIDs
SRAdb
geoquery
6.4 years ago
Deepak Tanwar
▴ 10
2
votes
0
replies
1.4k
views
Discrepancies between sradb, sraruninfo
sradb
6.9 years ago
langmea
▴ 20
1
vote
3
replies
2.3k
views
problem with getSRAfile in SRAdb
SRAdb
updated 7.5 years ago by
Jack Zhu
▴ 170 • written 7.5 years ago by
shidaxia
• 0
0
votes
8
replies
4.0k
views
error in SRAdb
SRAdb
SRAdb
updated 7.6 years ago by
djlemas
• 0 • written 10.8 years ago by
Faryabi, Robert NIH/NCI [F]
▴ 30
2
votes
1
reply
1.6k
views
Uniting SRA Data into a single file
R
fastq
SRA
sradb
updated 8.5 years ago by
Martin Morgan
25k • written 8.5 years ago by
grecoandreauni
• 0
0
votes
1
reply
2.0k
views
Empty SQL query result for SRA run
sradb
8.5 years ago
Thomas Sandmann
▴ 90
0
votes
2
replies
1.7k
views
SRAdb "outdated" sqlite db
sradb
sqlite
outdated
updated 8.6 years ago by
Sean Davis
21k • written 8.6 years ago by
Nicolas Delhomme
▴ 320
0
votes
1
reply
2.3k
views
Error downloading using SRAdb
fastq
sradb
ftp
updated 9.1 years ago by
Jack Zhu
▴ 170 • written 9.1 years ago by
yugi1001
• 0
2
votes
2
replies
2.2k
views
SRAdb: could not find function "sqliteTableFields"
sradb
sqlite
updated 10.5 years ago by
Sean Davis
21k • written 10.5 years ago by
dario.beraldi
• 0
0
votes
1
reply
1.6k
views
Analysis of Next Generation of Sequencing DAta
SRAdb
updated 10.5 years ago by
Sean Davis
21k • written 10.5 years ago by
Jerry Cholo
▴ 190
0
votes
0
replies
1.5k
views
SRAmetadb Bioconductor package; study record count low for 2013
SRAdb
SRAdb
10.9 years ago
Hugh Shanahan
▴ 50
0
votes
2
replies
1.9k
views
SRAmetadb Bioconductor package; study record count low for 2013
SRAdb
SRAdb
updated 10.9 years ago by
Jack Zhu
▴ 170 • written 10.9 years ago by
Al-Nasir, Jamie 2012
▴ 10
0
votes
0
replies
2.6k
views
SRAdb package - problems
Genetics
SRAdb
Genetics
SRAdb
11.9 years ago
Jack Zhu
▴ 170
0
votes
0
replies
1.8k
views
Is it possible to get SRA sample attributes for a given sample or experiment ID?
SRAdb
SRAdb
12.1 years ago
Vladimir Morozov
▴ 130
0
votes
2
replies
2.5k
views
getSRAdbFile cannot open URL
SRAdb
SRAdb
updated 12.6 years ago by
Martin Morgan
25k • written 12.6 years ago by
Nicholas Stong
▴ 10
0
votes
0
replies
1.5k
views
SRAdb: differences between the database and the NCBI website
PROcess
SRAdb
PROcess
SRAdb
12.8 years ago
Ben Woodcroft
▴ 40
0
votes
1
reply
1.6k
views
SRAdb: is the database missing some entries? (Ben Woodcroft)
SRAdb
SRAdb
updated 12.9 years ago by
Ben Woodcroft
▴ 40 • written 12.9 years ago by
Jack Zhu
▴ 170
0
votes
0
replies
1.6k
views
Cevap: Re: SRAdb error
SRAdb
SRAdb
13.1 years ago
Dan Tenenbaum
★ 8.2k
0
votes
2
replies
2.0k
views
SRAdb error
SRAdb
SRAdb
updated 13.1 years ago by
Sean Davis
21k • written 13.1 years ago by
Ayten YIGITER
▴ 10
0
votes
0
replies
1.7k
views
Bioconductor Digest, Vol 95, Issue 7
PROcess
SRAdb
PROcess
SRAdb
14.3 years ago
Jack Zhu
▴ 170
0
votes
2
replies
1.7k
views
SRAdb listFastq error
SRAdb
SRAdb
updated 14.3 years ago by
Sean Davis
21k • written 14.3 years ago by
Mark Dunning
★ 1.1k
0
votes
8
replies
2.6k
views
'SRAdb useful for visualizing BAM files'
SRAdb
SRAdb
updated 15.1 years ago by
Jack Zhu
▴ 170 • written 15.1 years ago by
Paul Shannon
★ 1.1k
28 results • Page
1 of 1
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Comment: DiffBind; Error: No sites have activity greater than filter value
by
etiennedanis
• 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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