Bioconductor SNPs

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3.1k

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snps VCF

updated 2.8 years ago by Arafat • 0 • written 8.0 years ago by rkdonthu ▴ 10

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774

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hierClust R SNPs clustering

updated 2.9 years ago by James W. MacDonald 68k • written 2.9 years ago by sekhwal • 0

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1.2k

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SNPs

5.9 years ago pltbiotech_tkarthi • 0

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1.4k

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snps vcf venn diagram ggplot2

6.1 years ago mictadlo ▴ 10

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1.5k

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bioconductor molecular biology snps

updated 6.2 years ago by James W. MacDonald 68k • written 6.2 years ago by jebreen20 • 0

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2.9k

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motifbreakR vcf snps motif analysis

updated 6.6 years ago by Valerie Obenchain ★ 6.8k • written 6.6 years ago by svlachavas ▴ 840

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1.7k

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variantannotation SNPs txdb.hsapiens.ucsc.hg19.knowngene ucsc

updated 7.6 years ago by Valerie Obenchain ★ 6.8k • written 7.6 years ago by Lna • 0

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1.6k

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hsapiens snps indels

updated 9.2 years ago by Hervé Pagès 16k • written 9.2 years ago by kredens • 0

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1.8k

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Biostrings SNPs alignment

updated 9.6 years ago by Hervé Pagès 16k • written 9.6 years ago by ben.ward ▴ 30

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2.1k

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gviz ideogram snps

updated 10.0 years ago by florian.hahne@novartis.com ★ 1.6k • written 10.0 years ago by vnyirongo • 0

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2.5k

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overlap snps granges iranges

updated 10.3 years ago by Michael Lawrence ★ 11k • written 10.4 years ago by anastasiya-terskih ▴ 10

11 results • Page 1 of 1

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Comment: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis by Blair • 0

@[Sprunki][1] wrote: Please read the vignette and think about adhering to the author's best practice, which discusses batch impacts. [1…

Comment: error in ChAMP loading file by 81becky • 0

hi Giulia, it sounds like you're facing a frustating issue with your chAMP import. One common suggestion is to double-check your CSV fomat…

Answer: DESeq2 adujsted p-value cutoff seemingly not working by James W. MacDonald 68k

From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…

Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by SofieK • 0

Thank you, I will try this and see.

Comment: DiffBind - question on the use of filtered or unfiltered input data by deltaexploitss • 0

Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…

Votes

A: Effect of lfcThreshold on p-value in DESeq2

Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet

What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?

Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =

Comment: Unused arguments error without used arguments in GSVA?

Awards • All

Popular Question to Vincent J. Carey, Jr. 6.7k

Teacher to Gordon Smyth 52k

Scholar to James W. MacDonald 68k