Bioconductor SNPs

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3.2k

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snps VCF

updated 2.9 years ago by Arafat • 0 • written 8.1 years ago by rkdonthu ▴ 10

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806

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hierClust R SNPs clustering

updated 3.0 years ago by James W. MacDonald 68k • written 3.0 years ago by sekhwal • 0

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1.2k

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SNPs

6.0 years ago pltbiotech_tkarthi • 0

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1.5k

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snps vcf venn diagram ggplot2

6.3 years ago mictadlo ▴ 10

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1.5k

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bioconductor molecular biology snps

updated 6.4 years ago by James W. MacDonald 68k • written 6.4 years ago by jebreen20 • 0

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3.0k

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motifbreakR vcf snps motif analysis

updated 6.8 years ago by Valerie Obenchain ★ 6.8k • written 6.8 years ago by svlachavas ▴ 840

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1.7k

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variantannotation SNPs txdb.hsapiens.ucsc.hg19.knowngene ucsc

updated 7.8 years ago by Valerie Obenchain ★ 6.8k • written 7.8 years ago by Lna • 0

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1.7k

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hsapiens snps indels

updated 9.4 years ago by Hervé Pagès 16k • written 9.4 years ago by kredens • 0

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1.9k

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Biostrings SNPs alignment

updated 9.7 years ago by Hervé Pagès 16k • written 9.7 years ago by ben.ward ▴ 30

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2.1k

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gviz ideogram snps

updated 10.2 years ago by florian.hahne@novartis.com ★ 1.6k • written 10.2 years ago by vnyirongo • 0

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2.5k

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overlap snps granges iranges

updated 10.5 years ago by Michael Lawrence ★ 11k • written 10.5 years ago by anastasiya-terskih ▴ 10

11 results • Page 1 of 1

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Comment: Differential expression analysis using two TCGA datasets by ATpoint ★ 4.8k

If these are two different batches then they're fully confounded making it statistically invalid. Biologically, I find it at least question…

Comment: PhD scholar by ATpoint ★ 4.8k

Hi, please consider asking this at biostars.org as here we're mainly answering precise technical questions towards the packages. You are se…

Answer: how to use `arrayWeightsQuick()`? by Gordon Smyth 52k

Yes, that is the correct way to use `arrayWeightsQuick`. Thanks for pointing out that there is still a reference to `arrayWeightsSimple` i…

Answer: fast apply on RleList by story.benjamin ▴ 20

solved with viewApply (code is simplified below) + map reduce on chrs test.split <- split(test.gr,seqnames(test.gr)) final.st…

Comment: fast apply on RleList by story.benjamin ▴ 20

Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…

Votes

Having Trouble Using CNE12() and CNE21() in CNEr

Answer: Having Trouble Using CNE12() and CNE21() in CNEr

annotation EpicV2

Answer: fast apply on RleList

Answer: BiocParallel_1.40.1.tar.gz not available

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Popular Question to Ariel Chernomoretz ▴ 170