Bioconductor SNPs

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3.0k

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snps VCF

updated 2.6 years ago by Arafat • 0 • written 7.8 years ago by rkdonthu ▴ 10

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740

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hierClust R SNPs clustering

updated 2.7 years ago by James W. MacDonald 67k • written 2.7 years ago by sekhwal • 0

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1.1k

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SNPs

5.7 years ago pltbiotech_tkarthi • 0

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1.4k

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snps vcf venn diagram ggplot2

5.9 years ago mictadlo ▴ 10

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1.4k

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bioconductor molecular biology snps

updated 6.0 years ago by James W. MacDonald 67k • written 6.0 years ago by jebreen20 • 0

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2.8k

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motifbreakR vcf snps motif analysis

updated 6.4 years ago by Valerie Obenchain ★ 6.8k • written 6.4 years ago by svlachavas ▴ 840

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1.6k

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variantannotation SNPs txdb.hsapiens.ucsc.hg19.knowngene ucsc

updated 7.4 years ago by Valerie Obenchain ★ 6.8k • written 7.4 years ago by Lna • 0

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1.6k

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hsapiens snps indels

updated 9.0 years ago by Hervé Pagès 16k • written 9.0 years ago by kredens • 0

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1.7k

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Biostrings SNPs alignment

updated 9.4 years ago by Hervé Pagès 16k • written 9.4 years ago by ben.ward ▴ 30

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2.0k

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gviz ideogram snps

updated 9.8 years ago by florian.hahne@novartis.com ★ 1.6k • written 9.8 years ago by vnyirongo • 0

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2.4k

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overlap snps granges iranges

updated 10.2 years ago by Michael Lawrence ★ 11k • written 10.2 years ago by anastasiya-terskih ▴ 10

11 results • Page 1 of 1

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Comment: Crossover design with limma by SamGG ▴ 360

IMHO, here are the missing annotations treatmentdrug_orderDrugPlac - treatmentplacebo_orderDrugPlac, # effect of drug for the Drug…

Answer: What type of counts data to import for performing Isoform analysis in edgeR by ATpoint ★ 4.5k

You don't need any of these files. You need the `catchSalmon` function which reads `quant.sf` and the inferential (Bootstrap/Gibbs) replica…

Comment: makeContrastsDream for Interaction by abadgerw • 0

Thank you! I will try this out.

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

Thanks, @gabrielhoffman The data is actually proteomics so it is intensity data which is why I did not use voom but rather ran ebayes wi…

Comment: ANOVA like approach of edgeR by Gordon Smyth 52k

To identify common upregulated or downregulated genes, you would need to test for media condition contrasts for each cell type separately, …

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Comment: Crossover design with limma

Answer: DESeq2 normalization vs VST vs rlog

Comment: makeContrastsDream for Interaction

Answer: Limma- Print-tip loess normalisation-printer layout information does not match M

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Popular Question to Marek Gierlinski ▴ 30

Scholar to Gordon Smyth 52k

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