Bioconductor SNPs

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snps VCF

updated 2.7 years ago by Arafat • 0 • written 7.9 years ago by rkdonthu ▴ 10

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756

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hierClust R SNPs clustering

updated 2.8 years ago by James W. MacDonald 67k • written 2.8 years ago by sekhwal • 0

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1.1k

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SNPs

5.8 years ago pltbiotech_tkarthi • 0

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1.4k

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snps vcf venn diagram ggplot2

6.0 years ago mictadlo ▴ 10

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1.4k

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bioconductor molecular biology snps

updated 6.1 years ago by James W. MacDonald 67k • written 6.1 years ago by jebreen20 • 0

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2.9k

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motifbreakR vcf snps motif analysis

updated 6.5 years ago by Valerie Obenchain ★ 6.8k • written 6.5 years ago by svlachavas ▴ 840

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1.6k

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variantannotation SNPs txdb.hsapiens.ucsc.hg19.knowngene ucsc

updated 7.5 years ago by Valerie Obenchain ★ 6.8k • written 7.5 years ago by Lna • 0

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1.6k

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hsapiens snps indels

updated 9.1 years ago by Hervé Pagès 16k • written 9.1 years ago by kredens • 0

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1.7k

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Biostrings SNPs alignment

updated 9.5 years ago by Hervé Pagès 16k • written 9.5 years ago by ben.ward ▴ 30

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2.0k

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gviz ideogram snps

updated 9.9 years ago by florian.hahne@novartis.com ★ 1.6k • written 9.9 years ago by vnyirongo • 0

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2.4k

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overlap snps granges iranges

updated 10.2 years ago by Michael Lawrence ★ 11k • written 10.2 years ago by anastasiya-terskih ▴ 10

11 results • Page 1 of 1

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Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0

Thank you. What is the difference between setting robust=TRUE in glmQLFit and estimateGLMRobustDisp? The paper i mentioned in the post used…

Comment: PCA of different bacterial species by Jeremy • 0

Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…

Comment: RnBeads::combine() - error? by Urotree • 0

pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…

Comment: RnBeads::combine() - error? by Urotree • 0

![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…

Comment: RnBeads::combine() - error? by Urotree • 0

rnb.set.biseq <- RnBiseqSet( pheno = pheno, sites = sites, meth = meth, covg = NULL, # This can be NULL if coverage …

Votes

Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis

scater/scran with TPMs from Salmon - counts?

A: Full length single-cell RNA-seq - tximport output for downstream analysis

Answer: Understanding tximport working with salmon outputs

Answer: enrichGOgradient color change

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Popular Question to gingergeiger22 • 0