Showing : SNPs • reset
1
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2
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3.2k
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Any tool to calculate Fst on haploid data?
snps VCF
updated 2.8 years ago by • 0 • written 8.0 years ago by ▴ 10
0
votes
1
reply
792
views
Error running hierClust
hierClust R SNPs clustering
updated 2.9 years ago by 68k • written 2.9 years ago by • 0
0
votes
0
replies
1.2k
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How to extract genomic positions of SNPs using snp-sites or using any R package?
SNPs
6.0 years ago pltbiotech_tkarthi • 0
0
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0
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1.4k
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vcf to venn diagram
snps vcf venn diagram ggplot2
6.2 years ago mictadlo ▴ 10
0
votes
6
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1.5k
views
Physical position to gene positions
bioconductor molecular biology snps
updated 6.3 years ago by 68k • written 6.3 years ago by • 0
2
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5
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3.0k
views
Error with R package motifbreakR while trying to read a vcf file with snps.from.file function
motifbreakR vcf snps motif analysis
updated 6.7 years ago by ★ 6.8k • written 6.7 years ago by ▴ 840
3
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4
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1.7k
views
No annotation for single SNPs
variantannotation SNPs txdb.hsapiens.ucsc.hg19.knowngene ucsc
updated 7.7 years ago by ★ 6.8k • written 7.7 years ago by • 0
0
votes
1
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1.6k
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Extract SNPs and INDELs
hsapiens snps indels
updated 9.3 years ago by 16k • written 9.3 years ago by • 0
0
votes
1
reply
1.8k
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Counting SNPs where ambiguity codes represent heterozygosity.
Biostrings SNPs alignment
updated 9.6 years ago by 16k • written 9.7 years ago by ▴ 30
0
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4
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2.1k
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Marking and annotating several SNPs on Ideogram track by Gviz package.
gviz ideogram snps
updated 10.1 years ago by ★ 1.6k • written 10.1 years ago by • 0
4
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3
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2.5k
views
Overlap the snps
overlap snps granges iranges
updated 10.4 years ago by ★ 11k • written 10.4 years ago by ▴ 10
11 results • Page 1 of 1
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Replies
Comment: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf by AB ▴ 110
Force=TRUE did the trick. Thank you.
Comment: www.stats.ox.ac.uk seems to be off, leading to errors/delays when installing pac by DENG • 0
[https://github.com/djunsheep/CRANextra/blob/main/README.md][1] add the following to the `.Rprofile` and `Rprofile.site` # fixing the…
Comment: Transcript ID Mismatch in riboWaltz Annotation Table by shepherl 4.1k
riboWalze is not a Bioconductor package and does not appear to be a Bioconductor function; the maintainer is not guaranteed to be on this …
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf by shepherl 4.1k
What is your `sessionInfo()`? I just tried locally and it works fine so there might have been a bad or interrupted download when initially…
Comment: error in ChAMP loading file by shocked.tick.zyet • 0
Great troubleshooting steps for ChAMP import issues! "ChAMP methylation data import errors" on [Google Search][1] for similar cases. Header…
Votes
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
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