Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
SNPRelate
•
reset
0
votes
0
replies
515
views
Database for exploring annotations of the coding genome at variants, such as candidate regulatory SNPs at disease-associated loci.
SNP
ExomeSeqData
snapcount
SNAData
SNPRelate
20 months ago
m610110001
• 0
0
votes
2
replies
1.0k
views
How to project a new vector onto PCA space using snpgdsPCA( )?
SNPRelate
updated 2.3 years ago by
Stephanie M. Gogarten
▴ 870 • written 2.3 years ago by
MatthaeusCaesar
• 0
0
votes
1
reply
1.2k
views
SNP annotation
SNPRelate
SNP
GWASTools
Annotation
GWASdata
updated 2.4 years ago by
Stephanie M. Gogarten
▴ 870 • written 2.6 years ago by
Adrián
• 0
0
votes
0
replies
882
views
SNPRelate handling of missing genotypes
SNPRelate
2.4 years ago
serpalma.v
▴ 60
0
votes
0
replies
731
views
#SeqSQC error: Problem while converting vcf format to gds format
SNPRelate
gdsfmt
SeqSQC
2.7 years ago
Bhargavi
• 0
0
votes
1
reply
983
views
error when running snpgdsLDpruning: The GDS node "genotype/data" does not exist.
SNPRelate
updated 3.5 years ago by
xiuwen.zheng
• 0 • written 3.5 years ago by
alyssahz
• 0
3
votes
1
reply
1.1k
views
How to add colors to the PCA made using SNPRelate
snprelate
updated 3.8 years ago by
James W. MacDonald
66k • written 3.8 years ago by
zen
• 0
1
vote
1
reply
839
views
What does SNPRelate::snpgdsDiss calculate?
SNPRelate
updated 5.0 years ago by
zhengx
▴ 30 • written 5.0 years ago by
grp2009
• 0
0
votes
1
reply
902
views
Different order of samples in output of snpgdsSlidingWindow to calculate Fst and aggregation method
SNPRelate
updated 5.1 years ago by
zhengx
▴ 30 • written 5.2 years ago by
serpalma.v
▴ 60
1
vote
1
reply
1.6k
views
VCF file does not include snp.id, can I still run SNPRelate for Relatedness Analysis? Data is output from STACKS for mangroves
SNPRelate
VCF
updated 5.2 years ago by
Stephanie M. Gogarten
▴ 870 • written 5.2 years ago by
cav3gh
• 0
1
vote
1
reply
1.0k
views
PCA axis description SNPRelate
SNPRelate
PCA
updated 5.3 years ago by
Stephanie M. Gogarten
▴ 870 • written 5.3 years ago by
serpalma.v
▴ 60
0
votes
1
reply
3.8k
views
SNPrelate, snpgdsFst is excluding all snps on non-autosomes, how can I get it to stop doing that?
snprelate
fst
updated 5.7 years ago by
zhengx
▴ 30 • written 5.7 years ago by
cav3gh
• 0
0
votes
1
reply
937
views
Using previously calculated PCs in GENESIS
genesis
snprelate
5.8 years ago
Stephanie M. Gogarten
▴ 870
0
votes
1
reply
1.3k
views
Write gds in parallel
gds
SNPRelate
BiocParallel
updated 6.2 years ago by
zhengx
▴ 30 • written 6.2 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
2
replies
1.6k
views
Error converting vcf to gds
snprelate
vcf
gds
updated 6.3 years ago by
zhengx
▴ 30 • written 6.3 years ago by
annat22
• 0
1
vote
2
replies
1.7k
views
Cannot read plink files correctly
snprelate
Tutorial
updated 7.1 years ago by
zhengx
▴ 30 • written 7.1 years ago by
AR3513
• 0
0
votes
1
reply
1.5k
views
SNPRelate Dendrogram Point Colors and Shapes
SNPRelate
R
updated 8.0 years ago by
zhengx
▴ 30 • written 8.0 years ago by
rfriedman22
• 0
3
votes
2
replies
1.8k
views
Minimum allele frequency (MAF) from a Genomic Data Structure (GDS) file
snprelate
GWASTools
updated 8.1 years ago by
Adrienne Stilp
▴ 30 • written 8.1 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
9
replies
6.3k
views
unable to update mgcv package
mgcv
snprelate
updated 8.5 years ago by
Martin Morgan
25k • written 8.5 years ago by
mail2vignesh1985
• 0
0
votes
4
replies
2.4k
views
NA values in snpgdsDiss dissimilarity matrix
snprelate
updated 8.6 years ago by
zhengx
▴ 30 • written 8.6 years ago by
blackgore
▴ 10
0
votes
0
replies
958
views
RADseq chromosomes unknown
snprelate
RADseq
Stacks
8.6 years ago
clive.darwell
• 0
0
votes
0
replies
1.9k
views
GWASTools
Organism
GWASTools
Organism
GWASTools
SNPRelate
11.3 years ago
Stephanie M. Gogarten
▴ 870
22 results • Page
1 of 1
Recent ...
Replies
Answer: Ranking the GSEA Results
by
Michael Love
42k
Some posts on this topic: https://www.google.com/search?q=site%3Asupport.bioconductor.org+GSEA+ranking+DESeq2
Answer: Advice on appropriateness of an offset in glmGamPoi/edgeR
by
Gordon Smyth
51k
edgeR allows observation specific offsets (as already pointed out), although I am not confident that would be a reliable solution to your p…
Comment: Research Project - Expanding search funtionality on the GEO database
by
gallantk5
• 0
Thank you I will take a look at those !
Comment: Research Project - Expanding search funtionality on the GEO database
by
gallantk5
• 0
I will send you an email and talk to my advisor about setting up a meeting. Thank you !
Comment: Research Project - Expanding search funtionality on the GEO database
by
Sean Davis
21k
You can use the Bioconductor Annotation packages for the Affymetrix chips of interest. - https://bioconductor.org/packages/release/BiocVie…
Votes
Answer: DESeq2 time course using fitted splines
Answer: DESeq2 time course using fitted splines
Comment: Difference between enrichGO results and Enrichr website results
Answer: Struggling to convert a large list of non-model genes into human orthologs, any
A: makeContrasts from limma overides "i" as a varible
Awards
• All
Popular Question
to
Gordon Smyth
51k
Popular Question
to
Sean Davis
21k
Popular Question
to
Guido Hooiveld
★ 4.0k
Scholar
to
Martin Morgan
25k
Popular Question
to
Wolfgang Huber
★ 13k
Locations
• All
United States,
40 minutes ago
United States,
50 minutes ago
India,
1 hour ago
Switzerland,
1 hour ago
WEHI, Melbourne, Australia,
2 hours ago
Traffic: 548 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6