Showing : SNPRelate • reset
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Database for exploring annotations of the coding genome at variants, such as candidate regulatory SNPs at disease-associated loci.
SNP ExomeSeqData snapcount SNAData SNPRelate
2.3 years ago m610110001 • 0
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2
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1.3k
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How to project a new vector onto PCA space using snpgdsPCA( )?
SNPRelate
updated 2.9 years ago by ▴ 890 • written 2.9 years ago by • 0
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1
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1.5k
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SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 3.0 years ago by ▴ 890 • written 3.2 years ago by • 0
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1.1k
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SNPRelate handling of missing genotypes
SNPRelate
3.1 years ago serpalma.v ▴ 60
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905
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#SeqSQC error: Problem while converting vcf format to gds format
SNPRelate gdsfmt SeqSQC
3.3 years ago Bhargavi • 0
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1
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1.2k
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error when running snpgdsLDpruning: The GDS node "genotype/data" does not exist.
SNPRelate
updated 4.2 years ago by • 0 • written 4.2 years ago by • 0
3
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1
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1.3k
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How to add colors to the PCA made using SNPRelate
snprelate
updated 4.4 years ago by 67k • written 4.4 years ago by • 0
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1
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997
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What does SNPRelate::snpgdsDiss calculate?
SNPRelate
updated 5.6 years ago by ▴ 30 • written 5.6 years ago by • 0
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1
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1.1k
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Different order of samples in output of snpgdsSlidingWindow to calculate Fst and aggregation method
SNPRelate
updated 5.7 years ago by ▴ 30 • written 5.8 years ago by ▴ 60
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1
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1.9k
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VCF file does not include snp.id, can I still run SNPRelate for Relatedness Analysis? Data is output from STACKS for mangroves
SNPRelate VCF
updated 5.9 years ago by ▴ 890 • written 5.9 years ago by • 0
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1
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1.2k
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PCA axis description SNPRelate
SNPRelate PCA
updated 5.9 years ago by ▴ 890 • written 5.9 years ago by ▴ 60
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1
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4.3k
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SNPrelate, snpgdsFst is excluding all snps on non-autosomes, how can I get it to stop doing that?
snprelate fst
updated 6.3 years ago by ▴ 30 • written 6.3 years ago by • 0
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1
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1.1k
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Using previously calculated PCs in GENESIS
genesis snprelate
6.4 years ago Stephanie M. Gogarten ▴ 890
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1
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1.6k
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Write gds in parallel
gds SNPRelate BiocParallel
updated 6.8 years ago by ▴ 30 • written 6.8 years ago by ▴ 40
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2
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1.9k
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Error converting vcf to gds
snprelate vcf gds
updated 6.9 years ago by ▴ 30 • written 6.9 years ago by • 0
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2
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2.0k
views
Cannot read plink files correctly
snprelate Tutorial
updated 7.7 years ago by ▴ 30 • written 7.7 years ago by • 0
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1
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1.7k
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SNPRelate Dendrogram Point Colors and Shapes
SNPRelate R
updated 8.6 years ago by ▴ 30 • written 8.6 years ago by • 0
3
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2
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2.0k
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Minimum allele frequency (MAF) from a Genomic Data Structure (GDS) file
snprelate GWASTools
updated 8.7 years ago by ▴ 30 • written 8.7 years ago by ▴ 40
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9
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6.8k
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unable to update mgcv package
mgcv snprelate
updated 9.1 years ago by 25k • written 9.1 years ago by • 0
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4
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2.7k
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NA values in snpgdsDiss dissimilarity matrix
snprelate
updated 9.2 years ago by ▴ 30 • written 9.2 years ago by ▴ 10
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1.1k
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RADseq chromosomes unknown
snprelate RADseq Stacks
9.2 years ago clive.darwell • 0
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2.1k
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GWASTools
Organism GWASTools Organism GWASTools SNPRelate
11.9 years ago Stephanie M. Gogarten ▴ 890
22 results • Page 1 of 1
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Replies
Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status by Renuka • 0
how you did it pls explain
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by James W. MacDonald 67k
If I understand correctly, you want to assess differential transcript abundances. If so, there are a couple of ways you can do that. One wa…
Answer: Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes by a.alkema • 0
Oh, that's silly - thanks, will do!
Answer: Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes by James W. MacDonald 67k
This support site is meant to provide support for Bioconductor packages, but `Meffil` is not part of Bioconductor. You could presumably con…
Comment: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k
> It looks like the ssgseaParam function might not be passing the > correct parameters to GSVA::gsva() Apparently because of the extra com…
Votes
Comment: Unused arguments error without used arguments in GSVA?
Answer: Reducing and aggregating GRanges with gaps using plyranges
Answer: Find exact GRanges match keeping metadata columns
Answer: Find exact GRanges match keeping metadata columns
Answer: Unused arguments error without used arguments in GSVA?
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