Bioconductor SIM

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PhenoGeneRanker BSgenome.Osativa.MSU.MSU7 mouse.db0 SIM

11 weeks ago Abu 0

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SIM pathview SIM pathview

11.2 years ago Luo Weijun ★ 1.6k

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probe affy oligo SIM farms probe affy oligo SIM farms

11.5 years ago Djork Clevert ▴ 210

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Pathways graph PROcess SIM gage pathview Pathways graph PROcess SIM gage pathview

updated 11.7 years ago by Ed ▴ 230 • written 11.7 years ago by Luo Weijun ★ 1.6k

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SNP Annotation probe annotate SIM SNP Annotation probe annotate SIM

12.5 years ago Guest User ★ 13k

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Pathways Organism SIM KEGGgraph Pathways Organism SIM KEGGgraph

updated 15.4 years ago by Marc Carlson ★ 7.2k • written 15.4 years ago by Fraser Sim ▴ 270

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Rgraphviz SIM Rgraphviz SIM

updated 16.0 years ago by Patrick Aboyoun ★ 1.6k • written 16.0 years ago by ravi ▴ 130

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Rgraphviz SIM Rgraphviz SIM

updated 16.2 years ago by Martin Morgan 25k • written 16.2 years ago by Sim, Fraser ▴ 350

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genefilter affy limma GeneSpring affylmGUI GLAD SIM genefilter affy limma GeneSpring

16.9 years ago Mark Cowley ▴ 400

9 results • Page 1 of 1

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Answer: How to analyze transcriptional trends over time from multiple RNA-seq datasets w by James W. MacDonald 68k

Your question is off-topic for this site. General questions about how to analyze data should be directed to biostars.org instead.

Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k

This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…

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A: DESeq2::sizeFactors() function does not output the sizeFactor table.

Comment: Filtering after DESeq

A: Normalized counts from DESeq2 results in similar but not equal total read count?

A: DESeq2: Different Dispersions for different sample groups

A: Contrasts & coefficients in limma

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