Bioconductor SIM

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PhenoGeneRanker BSgenome.Osativa.MSU.MSU7 mouse.db0 SIM

7 weeks ago Abu 0

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SIM pathview SIM pathview

11.1 years ago Luo Weijun ★ 1.6k

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probe affy oligo SIM farms probe affy oligo SIM farms

11.4 years ago Djork Clevert ▴ 210

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Pathways graph PROcess SIM gage pathview Pathways graph PROcess SIM gage pathview

updated 11.6 years ago by Ed ▴ 230 • written 11.6 years ago by Luo Weijun ★ 1.6k

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SNP Annotation probe annotate SIM SNP Annotation probe annotate SIM

12.4 years ago Guest User ★ 13k

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Pathways Organism SIM KEGGgraph Pathways Organism SIM KEGGgraph

updated 15.3 years ago by Marc Carlson ★ 7.2k • written 15.3 years ago by Fraser Sim ▴ 270

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Rgraphviz SIM Rgraphviz SIM

updated 15.9 years ago by Patrick Aboyoun ★ 1.6k • written 15.9 years ago by ravi ▴ 130

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Rgraphviz SIM Rgraphviz SIM

updated 16.1 years ago by Martin Morgan 25k • written 16.1 years ago by Sim, Fraser ▴ 350

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genefilter affy limma GeneSpring affylmGUI GLAD SIM genefilter affy limma GeneSpring

16.8 years ago Mark Cowley ▴ 400

9 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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