Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
SEQC
•
reset
0
votes
1
reply
1.1k
views
libraries in SEQC
SEQC
updated 8.8 years ago by
Wei Shi
★ 3.6k • written 8.8 years ago by
siamak
• 0
9
votes
4
replies
3.1k
views
News:
Experimental data package 'seqc'
seqc
rsubread
featurecounts
subjunc
ercc
News
10.0 years ago
Wei Shi
★ 3.6k
2 results • Page
1 of 1
Recent ...
Replies
Answer: What type of counts data to import for performing Isoform analysis in edgeR
by
Gordon Smyth
52k
I haven't used nf-core but, from browsing through their documentation, they didn't seem to have any pipeline for differential transcript ex…
Comment: What type of counts data to import for performing Isoform analysis in edgeR
by
Gordon Smyth
52k
The poster needs to run Salmon with `--numGibbsSamples=50`. I suspect that nf-core just won't do that, so Salmon needs to be run directly.
Comment: What type of counts data to import for performing Isoform analysis in edgeR
by
ATpoint
★ 4.6k
Probably nf-core did not run with bootstrap/gibbs replicates. Check the code. See salmon docs on how to turn that on.
Comment: What type of counts data to import for performing Isoform analysis in edgeR
by
mohammedtoufiq91
▴ 10
@atpoint Thank you. I did wanted to try using the `quant.sf` files from the `salmon` run by referring edgeR user guide example `4.6 Differe…
Comment: athPkgBuilder data source :missing probesets
by
bobihanigujjar
• 0
In this article, we'll explore the demand for unbranded BJJ Gis and the benefits of choosing unbranded Gis for customization. [does anyone …
Votes
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
Comment: ANOVA like approach of edgeR
Comment: Crossover design with limma
Answer: DESeq2 normalization vs VST vs rlog
Awards
• All
Popular Question
to
Marek Gierlinski
▴ 30
Scholar
to
Gordon Smyth
52k
Popular Question
to
mohammedtoufiq91
▴ 10
Popular Question
to
Hans-Ulrich Klein
▴ 330
Popular Question
to
phelankj
• 0
Locations
• All
France,
just now
Austria,
8 minutes ago
Wageningen University, Wageningen, the Netherlands,
17 minutes ago
China,
37 minutes ago
WEHI, Melbourne, Australia,
1 hour ago
Traffic: 712 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6