updated 6.1 years ago by
Aaron Lun
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written 6.1 years ago by
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Comment: Biomart and ensembl not working?
by
James W. MacDonald
67k
```
> library(biomaRt)
> mart <- useEnsembl("ensembl","hsapiens_gene_ensembl")
Ensembl site unresponsive, trying useast mirror
> mart
Objec…
Comment: Biomart and ensembl not working?
by
Irene
•
0
It seems to be working for mouse but not for human
ensembl <- biomaRt::useEnsembl(biomart = "ensembl", dataset = "hsapiens_gene_ensemb…
Answer: Biomart and ensembl not working?
by
James W. MacDonald
67k
Unfortunately the Ensembl websites can be a bit unstable. The only recourse that I know of is patience and trying later. It appears to be c…
Answer: Unknown gene transcripts after annotatr
by
James W. MacDonald
67k
Both NCBI and Ensembl are constantly pruning IDs. I would assume those have all been removed. [For example][1].
[1]: https://useast.…
Comment: Biomart and ensembl not working?
by
Irene
•
0
I have the same problem for the last ~30h
ensembl <- biomaRt::useEnsembl(biomart = "ensembl", dataset = "mmusculus_gene_ensembl", mir…
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