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SC3
•
reset
0
votes
3
replies
3.3k
views
Installing SC3: gfortran error on Mac M1
SC3
3.5 years ago
krp
• 0
1
vote
4
replies
2.0k
views
number of cell clusters in scRNA-seq
scran
scater
sc3
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
Bogdan
▴ 670
0
votes
7
replies
2.8k
views
differential expression between clusters (in distinct "treatments") in scRNAseq
scater
limma
scde
scran
sc3
5.8 years ago
Bogdan
▴ 670
4
votes
5
replies
2.3k
views
Using SC3 with batch corrected MNN values
SC3
Scater
Scran
scRNA-Seq
Batch Correction
updated 6.0 years ago by
Vladimir Kiselev
▴ 150 • written 6.0 years ago by
hamza_karakurt
▴ 60
0
votes
2
replies
1.2k
views
error running sc3_plot_de_genes in SC3 R package
SC3
updated 6.1 years ago by
Vladimir Kiselev
▴ 150 • written 6.1 years ago by
weiqiao1029
• 0
0
votes
1
reply
1.6k
views
SC3 how to customize plots ?
SC3
plot
consensus
marker
heatmap
updated 6.3 years ago by
Vladimir Kiselev
▴ 150 • written 6.3 years ago by
shaktirielland
• 0
0
votes
2
replies
1.1k
views
Failure to cluster SC3
SC3
updated 6.5 years ago by
Vladimir Kiselev
▴ 150 • written 6.5 years ago by
jhopkins
• 0
1
vote
1
reply
1.7k
views
A question about log_transformed
SC3
updated 6.7 years ago by
James W. MacDonald
68k • written 6.7 years ago by
liushang
• 0
0
votes
2
replies
1.2k
views
How can I show certain gene's expression in clusters by sc3
sc3
updated 6.9 years ago by
Vladimir Kiselev
▴ 150 • written 6.9 years ago by
qq1493438060
• 0
1
vote
1
reply
1.1k
views
Is there a way to pull out the stability index matrix from the SC3 object?
sc3
updated 7.1 years ago by
Vladimir Kiselev
▴ 150 • written 7.2 years ago by
yingzi.zhang
▴ 10
0
votes
1
reply
1.5k
views
SC3 Package: marker genes and normal genes obtained from featureData
SC3
updated 7.2 years ago by
Vladimir Kiselev
▴ 150 • written 7.3 years ago by
angela.ubn
• 0
1
vote
1
reply
1.9k
views
Batch effect removal before SC3?
SC3
batch effect
removebatcheffect
updated 7.3 years ago by
Vladimir Kiselev
▴ 150 • written 7.3 years ago by
muad.abdelhay
▴ 10
1
vote
8
replies
2.9k
views
SC3_estimate_k formatting error?
sc3
scater
updated 7.3 years ago by
Vladimir Kiselev
▴ 150 • written 7.4 years ago by
alexandriapinto1
▴ 10
5
votes
2
replies
7.1k
views
Raw count data for SC3 and SingleCellExperiment set problem
singlecellexperiment
sc3
scater
updated 7.4 years ago by
Vladimir Kiselev
▴ 150 • written 7.4 years ago by
chengyuzou
▴ 10
4
votes
5
replies
2.3k
views
SC3 gene clusters
SC3
single cell
single-cell
Tutorial
updated 7.4 years ago by
Martin Morgan
25k • written 7.5 years ago by
ahmed.elewa
▴ 20
1
vote
1
reply
1.7k
views
Does SC3 correct counts for gene length?
sc3
scater
single-cell
rna-seq
biclustering
updated 7.6 years ago by
Vladimir Kiselev
▴ 150 • written 7.6 years ago by
firestar
▴ 20
0
votes
1
reply
3.8k
views
Import .mtx file in R
sc3
updated 7.8 years ago by
Vladimir Kiselev
▴ 150 • written 7.8 years ago by
suman70532
• 0
4
votes
2
replies
1.7k
views
sc3_plot_expression, colour labels
sc3
single-cell
updated 7.8 years ago by
Vladimir Kiselev
▴ 150 • written 7.8 years ago by
cfustero
▴ 20
3
votes
3
replies
1.6k
views
Sharing SC3_interactive results
SC3
single-cell
shiny
updated 7.9 years ago by
Vladimir Kiselev
▴ 150 • written 7.9 years ago by
cfustero
▴ 20
4
votes
3
replies
2.2k
views
using SC3 and scater for bulk-RNAseq
sc3
scater
scRNAseq
updated 8.1 years ago by
Vladimir Kiselev
▴ 150 • written 8.1 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
5
replies
2.2k
views
sc3_prepare function error
sc3
scater
single-cell
single cell
updated 8.1 years ago by
Vladimir Kiselev
▴ 150 • written 8.1 years ago by
Assa Yeroslaviz
★ 1.5k
3
votes
2
replies
1.6k
views
SC3 tutorial error
SC3
updated 8.4 years ago by
Vladimir Kiselev
▴ 150 • written 8.4 years ago by
Jenn
▴ 30
3
votes
1
reply
1.6k
views
SC3 with latent variable corrected counts
SC3
single cell
updated 8.4 years ago by
Vladimir Kiselev
▴ 150 • written 8.4 years ago by
Mark
▴ 10
23 results • Page
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Comment: compute_fasta_digest does not match Salmon index hash
by
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• 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Comment: Question on displaying color photo as Greyscale in EBImage
by
Albert
• 0
great and very nice
Comment: European Bioconductor Conference 2023 planning
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Pandora
• 0
The [Tag Game][1] is not just a simple chase; it involves strategy and tactics as players must think quickly to avoid being tagged. Various…
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[Geometry Dash Lite][1] is the free version of the famous Geometry Dash series. It was made by RobTop Games and lets players enjoy the thri…
Votes
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
what the test method for enrichGO in clusterProfiler?
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