Bioconductor SAMSeq

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SAMSeq

7.0 years ago array chip ▴ 420

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r samseq microarray rnaseq geneexpression

8.3 years ago namilio • 0

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deseq2 SAMseq differential expression

updated 8.8 years ago by Michael Love 43k • written 8.8 years ago by aylj • 0

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Comment: Margins for gene_set_enrichment_plot by Leonardo Collado Torres ★ 1.1k

Thanks! This one might be worth remaking with `ComplexHeatmap`. Similar to https://github.com/LieberInstitute/spatialLIBD/pull/91 that was …

Comment: DESeq2 - Comparing Comparisons by James W. MacDonald 67k

Full disclosure: I don't use `DESeq2`, and find the contrasts specification confusing. Because of that, I generally recommend using `result…

Comment: DESeq2 - Comparing Comparisons by sk • 0

Hi James, Thank you for your response! Quick follow-up; if I structure my contrast as below, will it perform (A-B) - (C-D)? res_diff <…

Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe by txema.heredia • 0

You could check the reply I got to a similar issue here: https://support.bioconductor.org/p/9160134/ In short, DESeq2 uses by default `ind…

Comment: EuroBioC2024 abstract submission is open! by Jessica • 0

Mixing it up with a bunch of categories like short talks, presentation packs, posters, and contribution sessions makes sharing research and…

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Answer: Mapping Between GenBank ID's and Uniprot

A: Relations used in GO.db GOBPANCESTOR

Relations used in GO.db GOBPANCESTOR

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