Showing : Rqc • reset
0
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Rbam and Rqc files error
Rqc rbams rqc mmusculus scanbams
updated 24 months ago by ★ 4.7k • written 24 months ago by • 0
1
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2
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1.4k
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Rqc aborts with error corrupted double-linked list with valid fastq
Rqc
updated 8.1 years ago by ▴ 70 • written 8.1 years ago by ▴ 10
3
votes
12
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6.9k
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packages installation problem
limma Rqc beadarray Lumi
updated 9.0 years ago by ▴ 70 • written 9.0 years ago by • 0
5
votes
15
replies
3.3k
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Rqc for RNA-Seq data
Rqc
9.0 years ago kritikamish99 ▴ 10
4 results • Page 1 of 1
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Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies by ATpoint ★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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