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CHIPQC Diffbind chipseq rory stark Thomas Carroll

updated 2.3 years ago by arisarkar88 ▴ 40 • written 4.6 years ago by bioinfouser2 ▴ 10

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diffbind rory stark chip seq

updated 4.0 years ago by Rory Stark ★ 5.2k • written 4.6 years ago by bioinfouser2 ▴ 10

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diffbind Rory Stark coordinate

updated 4.7 years ago by Rory Stark ★ 5.2k • written 4.7 years ago by Guandong Shang ▴ 40

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diffbind rory stark

7.3 years ago andrew.gehrke • 0

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rory stark

7.9 years ago • updated 7.5 years ago mforoo1 • 0

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diffbind chipseq atac-seq rory stark

updated 7.6 years ago by Rory Stark ★ 5.2k • written 7.6 years ago by andrew.gehrke • 0

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Rory Stark diffbind TMM edgeR chipseq

updated 8.4 years ago by Rory Stark ★ 5.2k • written 8.5 years ago by akdess • 0

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Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0

This makes a lot of sense, thank you very much!

Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0

Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…

Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k

Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…

Comment: Handling Epic Array Data by Melisa Tecik • 0

Thanks a lot for the help. You saved my day

Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k

The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…

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A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

Answer: Differene between the Wald and LRT test for time-series gene expression data

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela

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