Bioconductor Rle

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1.7k

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RLE normalization deseq2

updated 24 months ago by ATpoint ★ 4.7k • written 24 months ago by SH ▴ 10

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1.2k

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S4 Rcpp InteractionSet IRanges Rle

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by lklei001 • 0

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2.2k

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deseq2 RLE

updated 5.1 years ago by Michael Love 43k • written 5.1 years ago by f_pardow • 0

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1.4k

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variantannotation VRanges R Rle

updated 6.7 years ago by Valerie Obenchain ★ 6.8k • written 6.7 years ago by Jayendra Shinde • 0

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1.2k

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iranges s4vectors rle rlelist

6.7 years ago endrebak85 ▴ 40

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3.6k

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rle deseq2 normalization

updated 6.8 years ago by Michael Love 43k • written 6.8 years ago by Aurora ▴ 20

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1.4k

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Rle Big data coverageByTranscript

6.9 years ago hauken_heyken ▴ 80

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1.9k

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delayedarray rlelist rle

updated 7.4 years ago by Peter Hickey ▴ 750 • written 7.4 years ago by davide risso ▴ 980

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1.8k

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DataFrame Rle generic expression table

updated 20 months ago by Hervé Pagès 16k • written 7.8 years ago by Charles Plessy ▴ 180

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2.0k

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Rle granges iranges

8.4 years ago my4 ▴ 10

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1.9k

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granges Rle coverage View mean

updated 8.7 years ago by Michael Lawrence ★ 11k • written 8.7 years ago by Christian Ruckert ▴ 170

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3.1k

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biostrings coverage rle iranges

8.8 years ago likeeatingpizza ▴ 10

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1.6k

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rle normalization table

updated 9.4 years ago by Steve Lianoglou ★ 13k • written 9.4 years ago by aiko • 0

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2.3k

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RLE GenomicFeatures rnaseq

updated 9.9 years ago by Hervé Pagès 16k • written 9.9 years ago by gen ▴ 30

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3.1k

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RLE iranges granges coverage

updated 9.9 years ago by Martin Morgan 25k • written 9.9 years ago by gen ▴ 30

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2.2k

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rle list irange grangeslist

updated 9.9 years ago by Chris Seidel ▴ 80 • written 9.9 years ago by gen ▴ 30

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1.3k

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rle Views

10.1 years ago Sean Davis 21k

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1.7k

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views iranges rle

10.1 years ago Janet Young ▴ 740

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2.6k

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affyPLM RLE NUSE

updated 10.1 years ago by Sean Davis 21k • written 10.1 years ago by beverly893 ▴ 10

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1.3k

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Rle boxplot

10.1 years ago Johannes Rainer ★ 2.1k

20 results • Page 1 of 1

Recent ...

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Comment: sesameDataCache is not work properly on my system by Samreen • 0

Any luck with this? I have tried all of the above and it still doesn't work. This is my session info and I'm on a cluster computing environ…

Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k

If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …

Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k

Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …

Comment: concentration tables suitable as input for new packages? by wilkinson • 0

I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…

Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k

Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…

Votes

Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

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