Showing : Ringo • reset
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making ExpressionSet from RGList via NChannelSet for use with 'sva'
biobase convert sva ringo arrayqualitymetrics
updated 8.3 years ago by 51k • written 8.3 years ago by • 0
2
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1
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1.2k
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Ringo File Opening Error
Ringo
updated 8.8 years ago by ★ 8.2k • written 8.8 years ago by • 0
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4
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1.2k
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Two color Nucleosomes ChIP-ChIP data analysis using Ringo package.
limma ringo starr
8.9 years ago ashubiochem • 0
0
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1
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1.5k
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Ringo Plots Only Partially Made
Ringo affy tilingarray plot starr
9.0 years ago bruce.moran ▴ 30
0
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1
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1.3k
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vsn normalization in Ringo package
Normalization vsn Ringo Normalization vsn Ringo
updated 9.9 years ago by ▴ 10 • written 9.9 years ago by ★ 13k
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4
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1.7k
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Using package Ringo to analyze Agilent Chip on chip array
Ringo Ringo
12.2 years ago Gabriel Wajnberg ▴ 60
0
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0
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using Ringo and ACME package for NimbleGen MeDIP-chip data
Ringo ACME Ringo ACME
13.1 years ago Adeolu Adewoye ▴ 40
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1.0k
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Normalizing together Nimblegen arrays with different designs
Normalization probe limma Ringo Normalization probe limma Ringo
13.3 years ago Wlasiuk Battagliotti, Gabriela - wlasiuk ▴ 20
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analysing NimbleGen CGH for CNV
aCGH probe aCGH snapCGH Ringo aCGH probe aCGH snapCGH Ringo
13.6 years ago Adeolu Adewoye ▴ 40
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1
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1.1k
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Ringo for Nimblegen ChIP-chip data in GEO
Normalization Ringo Normalization Ringo
updated 13.7 years ago by ★ 13k • written 13.7 years ago by ▴ 190
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1.2k
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Quantile normalization in Ringo package
Ringo Ringo
updated 13.8 years ago by ▴ 450 • written 13.8 years ago by ▴ 250
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4
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1.5k
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using smoothX in Ringo
probe Ringo probe Ringo
updated 13.9 years ago by ▴ 450 • written 13.9 years ago by ▴ 50
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1
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994
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Ringo and dye swaps
Ringo Ringo
updated 13.9 years ago by ▴ 450 • written 13.9 years ago by ▴ 10
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3
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1.4k
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Error using getMeans function in Ringo/Starr
Yeast probe Ringo Yeast probe Ringo
14.2 years ago Noah Dowell ▴ 410
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2
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1.6k
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Nimblegen CGH ringo to snapCGH
CGH snapCGH Ringo CGH snapCGH Ringo
updated 14.2 years ago by ▴ 450 • written 14.2 years ago by ▴ 80
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1.1k
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retrieveGenomicFeatureAnnotation.R file supplied with Ringo
biomaRt Ringo biomaRt Ringo
updated 14.3 years ago by ▴ 450 • written 14.3 years ago by ★ 1.3k
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1
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1.1k
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Question about RINGO and follow up analysis
Ringo Ringo
updated 14.5 years ago by ▴ 450 • written 14.5 years ago by ▴ 10
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0
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1.0k
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Ringo/Starr genomeAnno Object Tips
Annotation biomaRt Ringo Annotation biomaRt Ringo
14.5 years ago Noah Dowell ▴ 410
0
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1
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956
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Ringo/Starr getProfiles function
biomaRt Ringo Starr biomaRt Ringo Starr
updated 14.6 years ago by ★ 13k • written 14.6 years ago by ▴ 410
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4
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1.5k
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Ringo - finding enriched regions
Ringo Ringo
updated 14.7 years ago by ▴ 450 • written 14.7 years ago by ▴ 330
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0
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1.2k
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Ringo package: biological replicate correlation within cher (chip-enriched region)
Ringo Ringo
14.8 years ago Diego Villar ▴ 40
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0
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978
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Ringo package: error using computeRunningMedians function
Ringo Ringo
14.8 years ago Joern Toedling ▴ 450
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4
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1.3k
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Ringo package: error using computeRunningMedians function
Ringo Ringo
updated 14.8 years ago by ▴ 450 • written 14.8 years ago by ▴ 40
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2
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1.1k
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Problem with Ringo
Ringo Ringo
updated 14.9 years ago by ★ 13k • written 14.9 years ago by ▴ 240
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2
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1.4k
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Advice for ChIPchip-Analysis
Ringo Ringo
15.0 years ago • updated 14.9 years ago Karin Zimmermann ▴ 20
0
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1
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1.1k
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Missing Autocorrelation in Ringo
probe Ringo probe Ringo
updated 15.0 years ago by ▴ 450 • written 15.0 years ago by ▴ 80
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4
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1.4k
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Missing Autocorrelation in Ringo
Annotation Cancer Ringo Annotation Cancer Ringo
updated 15.0 years ago by ▴ 450 • written 15.0 years ago by ▴ 80
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2
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1.2k
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Nimblegen / Ringo / Preprocess error: inherits(myRG, "RGList") is not TRUE
Preprocessing Homo sapiens probe Ringo Preprocessing Homo sapiens probe Ringo
15.1 years ago JEAN-YVES SGRO ▴ 20
0
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2
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1.7k
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Ringo install fails on R 2.8.0
Ringo Ringo
updated 15.7 years ago by ▴ 140 • written 15.7 years ago by ▴ 90
0
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3
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1.3k
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Ringo: Error in preprocess() with R-2.7.0, but not with R-2.5.0
probe annotate geneplotter affy vsn Ringo probe annotate geneplotter affy vsn Ringo
updated 16.0 years ago by ▴ 730 • written 16.0 years ago by ▴ 110
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1
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990
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Error using Ringos readNimblegen
Ringo Ringo
updated 16.1 years ago by ▴ 730 • written 16.1 years ago by ▴ 10
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0
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1.2k
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Using Ringo
Normalization vsn convert Ringo Normalization vsn convert Ringo
16.9 years ago Joern Toedling ▴ 730
32 results • Page 1 of 1
Recent ...
Replies
Comment: Ranking the GSEA Results by Lluís Revilla Sancho ▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction by Antonio • 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results by alserg ▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results by alserg ▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user) by shepherl 3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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