Bioconductor Rhtslib

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Rhts Rhtslib

3.9 years ago anand_mt ▴ 90

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Rhtslib installation error zlib

updated 5.4 years ago by leoadam014 • 0 • written 6.4 years ago by boboshaq • 0

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2.5k

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software error Rhtslib zlib.h

updated 5.5 years ago by Hervé Pagès 16k • written 5.5 years ago by juandenciso14 • 0

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2.6k

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biocLite package installation withr biocinstaller rhtslib

updated 6.5 years ago by Martin Morgan 25k • written 6.5 years ago by merv ▴ 150

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Rhtslib

updated 6.8 years ago by Hervé Pagès 16k • written 6.8 years ago by Aaron Lun ★ 28k

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1.6k

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diffhic csaw Rhtslib

updated 7.4 years ago by Martin Morgan 25k • written 7.4 years ago by favorov • 0

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2.3k

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Rhtslib htslib package

updated 7.6 years ago by Martin Morgan 25k • written 7.6 years ago by Shian Su ▴ 40

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Comment: Use of limma R package with targeted proteomics for DE analysis by svlachavas ▴ 840

Dear Gordon, thank you for returning back ! Actually the output is not "NPX"-as indeed it most frequent output for a lot of pannels-but as …

Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

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Comment: Use of limma R package with targeted proteomics for DE analysis

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

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