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Repitools
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reset
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3
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2.5k
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How to handle multi-TSS genes in Repitools?
repitools
promoter
tss
annotation
7.1 years ago
Ryan C. Thompson
★ 7.9k
1
vote
2
replies
1.7k
views
cpgDensityCalc function in Repitools giving contradictory tools
repitools
bioconductor
cpgDensityCalc
8.0 years ago
divyswar01
• 0
0
votes
0
replies
1.1k
views
Analysis of MBD-seq data without ssl control using BayMeth
Baymeth
methylation
MBD-seq
Repitools
8.9 years ago
pm2015
• 0
0
votes
0
replies
1.1k
views
SssI free analysis in BayMeth/Repitools
repitools
9.8 years ago
Matthias Lienhard
▴ 280
0
votes
0
replies
1.2k
views
Repitools - featureScores - mappability Bsgenome object
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
11.1 years ago
Dario Strbenac
★ 1.6k
0
votes
0
replies
1.5k
views
Repitools - featureScores - mappability Bsgenome object
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
11.2 years ago
Jaritz,Markus
▴ 20
0
votes
5
replies
2.5k
views
Graph of methylation data around TSS - Repitools or other package?
GO
Repitools
GO
Repitools
updated 11.4 years ago by
Dario Strbenac
★ 1.6k • written 11.4 years ago by
Tim Smith
★ 1.1k
0
votes
0
replies
1.2k
views
Analysing grouped datasets in repitools
limma
Repitools
limma
Repitools
12.2 years ago
Guest User
★ 13k
0
votes
21
replies
7.7k
views
BAM files to Genomic Ranges object
Alignment
convert
Repitools
Alignment
convert
Repitools
updated 17 months ago by
Marge
• 0 • written 12.3 years ago by
José Luis Lavín
▴ 280
0
votes
3
replies
2.0k
views
Repitools/ClusterPlots
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
updated 13.5 years ago by
Chao-Jen Wong
▴ 580 • written 13.5 years ago by
Guest User
★ 13k
10 results • Page
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Answer: Design formula for circadian time-course data for vst() function
by
ATpoint
★ 4.8k
This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…
Comment: Filtering after DESeq
by
caroline.zanchi
• 0
... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…
Comment: Module membership vs gene significance result and Modules-trait relationships re
by
Vinaya
• 0
Hi. I am having the same issue, and haven't found a solution still.
Comment: Feature Counts - potential bug with outfile.jcounts
by
Tom
• 0
[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…
Comment: Filtering after DESeq
by
caroline.zanchi
• 0
I am going to try this right now, thanks !
Votes
Answer: CluserProfiler message "No gene can be mapped"
A: Minfi issue: return code from pthread_create() is 22
Comment: Filtering after DESeq
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
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