Bioconductor Repitools

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repitools promoter tss annotation

7.1 years ago Ryan C. Thompson ★ 7.9k

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repitools bioconductor cpgDensityCalc

8.0 years ago divyswar01 • 0

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Baymeth methylation MBD-seq Repitools

8.8 years ago pm2015 • 0

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repitools

9.7 years ago Matthias Lienhard ▴ 280

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

11.1 years ago Dario Strbenac ★ 1.6k

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

11.1 years ago Jaritz,Markus ▴ 20

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GO Repitools GO Repitools

updated 11.4 years ago by Dario Strbenac ★ 1.6k • written 11.4 years ago by Tim Smith ★ 1.1k

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limma Repitools limma Repitools

12.1 years ago Guest User ★ 13k

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Alignment convert Repitools Alignment convert Repitools

updated 16 months ago by Marge • 0 • written 12.2 years ago by José Luis Lavín ▴ 280

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

updated 13.4 years ago by Chao-Jen Wong ▴ 580 • written 13.4 years ago by Guest User ★ 13k

10 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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