Bioconductor Repitools

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repitools promoter tss annotation

6.9 years ago Ryan C. Thompson ★ 7.9k

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repitools bioconductor cpgDensityCalc

7.9 years ago divyswar01 • 0

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Baymeth methylation MBD-seq Repitools

8.7 years ago pm2015 • 0

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repitools

9.6 years ago Matthias Lienhard ▴ 280

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

11.0 years ago Dario Strbenac ★ 1.6k

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

11.0 years ago Jaritz,Markus ▴ 20

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GO Repitools GO Repitools

updated 11.3 years ago by Dario Strbenac ★ 1.6k • written 11.3 years ago by Tim Smith ★ 1.1k

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limma Repitools limma Repitools

12.0 years ago Guest User ★ 13k

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Alignment convert Repitools Alignment convert Repitools

updated 15 months ago by Marge • 0 • written 12.1 years ago by José Luis Lavín ▴ 280

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

updated 13.3 years ago by Chao-Jen Wong ▴ 580 • written 13.3 years ago by Guest User ★ 13k

10 results • Page 1 of 1

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Comment: How to formulate 2 factor nested design in DESeq2 by Mariane • 0

Hi JK Kim, I'm having a problem similar to the one you reported. Could you please tell me how you solved this problem? Thanks

Comment: batch effect removal for agilent microarray data by gaye.yilmaz • 0

Thank you

Answer: Pathview visualisation not including positive log2 fold changes by James W. MacDonald 68k

Without providing a self-contained example, nobody can tell you if/where you went wrong. Since you get a KEGG pathway with some of the gene…

Comment: Differential variance analysis - can i use deseq2 by Marwan • 0

Thanks Michael for your answer, i didnt mean to use Deseq2 directly for the variance testing, but more like asking if using the (VST) data…

Answer: Differential variance analysis - can i use deseq2 by Michael Love 43k

We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …

Votes

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

A: How to extract DESeq2 results for an interaction design

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?

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