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Repitools
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reset
0
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3
replies
2.2k
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How to handle multi-TSS genes in Repitools?
repitools
promoter
tss
annotation
6.7 years ago
Ryan C. Thompson
★ 7.9k
1
vote
2
replies
1.5k
views
cpgDensityCalc function in Repitools giving contradictory tools
repitools
bioconductor
cpgDensityCalc
7.6 years ago
divyswar01
• 0
0
votes
0
replies
1.0k
views
Analysis of MBD-seq data without ssl control using BayMeth
Baymeth
methylation
MBD-seq
Repitools
8.5 years ago
pm2015
• 0
0
votes
0
replies
992
views
SssI free analysis in BayMeth/Repitools
repitools
9.3 years ago
Matthias Lienhard
▴ 280
0
votes
0
replies
1.1k
views
Repitools - featureScores - mappability Bsgenome object
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
10.7 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.4k
views
Repitools - featureScores - mappability Bsgenome object
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
10.7 years ago
Jaritz,Markus
▴ 20
0
votes
5
replies
2.3k
views
Graph of methylation data around TSS - Repitools or other package?
GO
Repitools
GO
Repitools
updated 11.0 years ago by
Dario Strbenac
★ 1.5k • written 11.0 years ago by
Tim Smith
★ 1.1k
0
votes
0
replies
1.1k
views
Analysing grouped datasets in repitools
limma
Repitools
limma
Repitools
11.7 years ago
Guest User
★ 13k
0
votes
21
replies
7.2k
views
BAM files to Genomic Ranges object
Alignment
convert
Repitools
Alignment
convert
Repitools
updated 12 months ago by
Marge
• 0 • written 11.9 years ago by
José Luis Lavín
▴ 280
0
votes
3
replies
1.9k
views
Repitools/ClusterPlots
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
updated 13.0 years ago by
Chao-Jen Wong
▴ 580 • written 13.1 years ago by
Guest User
★ 13k
10 results • Page
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Recent ...
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Answer: ANOVA like approach of edgeR
by
Gordon Smyth
51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data
by
Gordon Smyth
51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix?
by
James W. MacDonald
67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?
Votes
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom
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