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Repitools
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3
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2.4k
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How to handle multi-TSS genes in Repitools?
repitools
promoter
tss
annotation
6.9 years ago
Ryan C. Thompson
★ 7.9k
1
vote
2
replies
1.6k
views
cpgDensityCalc function in Repitools giving contradictory tools
repitools
bioconductor
cpgDensityCalc
7.9 years ago
divyswar01
• 0
0
votes
0
replies
1.1k
views
Analysis of MBD-seq data without ssl control using BayMeth
Baymeth
methylation
MBD-seq
Repitools
8.7 years ago
pm2015
• 0
0
votes
0
replies
1.0k
views
SssI free analysis in BayMeth/Repitools
repitools
9.6 years ago
Matthias Lienhard
▴ 280
0
votes
0
replies
1.1k
views
Repitools - featureScores - mappability Bsgenome object
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
11.0 years ago
Dario Strbenac
★ 1.6k
0
votes
0
replies
1.5k
views
Repitools - featureScores - mappability Bsgenome object
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
11.0 years ago
Jaritz,Markus
▴ 20
0
votes
5
replies
2.4k
views
Graph of methylation data around TSS - Repitools or other package?
GO
Repitools
GO
Repitools
updated 11.3 years ago by
Dario Strbenac
★ 1.6k • written 11.3 years ago by
Tim Smith
★ 1.1k
0
votes
0
replies
1.2k
views
Analysing grouped datasets in repitools
limma
Repitools
limma
Repitools
12.0 years ago
Guest User
★ 13k
0
votes
21
replies
7.5k
views
BAM files to Genomic Ranges object
Alignment
convert
Repitools
Alignment
convert
Repitools
updated 15 months ago by
Marge
• 0 • written 12.1 years ago by
José Luis Lavín
▴ 280
0
votes
3
replies
1.9k
views
Repitools/ClusterPlots
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
updated 13.3 years ago by
Chao-Jen Wong
▴ 580 • written 13.3 years ago by
Guest User
★ 13k
10 results • Page
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Comment: How to formulate 2 factor nested design in DESeq2
by
Mariane
• 0
Hi JK Kim, I'm having a problem similar to the one you reported. Could you please tell me how you solved this problem? Thanks
Comment: batch effect removal for agilent microarray data
by
gaye.yilmaz
• 0
Thank you
Answer: Pathview visualisation not including positive log2 fold changes
by
James W. MacDonald
68k
Without providing a self-contained example, nobody can tell you if/where you went wrong. Since you get a KEGG pathway with some of the gene…
Comment: Differential variance analysis - can i use deseq2
by
Marwan
• 0
Thanks Michael for your answer, i didnt mean to use Deseq2 directly for the variance testing, but more like asking if using the (VST) data…
Answer: Differential variance analysis - can i use deseq2
by
Michael Love
43k
We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …
Votes
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
A: How to extract DESeq2 results for an interaction design
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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