Showing : Regression • reset
0
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2
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193
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Test of Multiple Linear Combination on coefficients from Wald Test in Deseq2
Regression DESeq2
updated 14 days ago by 66k • written 14 days ago by • 0
0
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2
replies
303
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WGCNA: analysis of complex trait associations with regressions
Regression WGCNA
3 months ago w.cookson • 0
5
votes
25
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1.2k
views
limma models out of memory issue on Slurm HPC
Regression limma STATISITICS HPC
updated 12 weeks ago by 51k • written 3 months ago by ▴ 10
0
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0
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296
views
multipollutant models
statistics Regression r limma
7 months ago Jitendra ▴ 10
2
votes
4
replies
1.2k
views
Overfitting in limma
limma Regression overfitting
updated 2.1 years ago by 51k • written 2.2 years ago by ▴ 30
1
vote
1
reply
858
views
limma: pvalues for coefficients topTable
TimeSeriesExperiment Regression top limma
updated 2.9 years ago by 66k • written 2.9 years ago by • 0
4
votes
3
replies
1.0k
views
Diffbind for regressing multiple confounding variables (blocking factors)
diffbind block regression deseq2 chipseq
updated 3.7 years ago by ★ 5.2k • written 4.7 years ago by ▴ 10
0
votes
1
reply
593
views
Which Package Should I Use to Predict Model Output Using RNA Seq Data?
regression
updated 4.0 years ago by 51k • written 4.0 years ago by • 0
7
votes
4
replies
4.5k
views
Limma when to use zero intercept
limma regression differential expression linear model
updated 4.4 years ago by 51k • written 4.4 years ago by • 0
1
vote
2
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831
views
EdgeR -- differentially expressed genes across a continuous variable
edger continuous regression
updated 5.4 years ago by 66k • written 5.4 years ago by • 0
6
votes
7
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2.2k
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Multi-level experiment with limma
limma design and contrast matrix differential gene expression regression
updated 7.0 years ago by ★ 28k • written 7.0 years ago by • 0
3
votes
3
replies
1.3k
views
Limma - Two-color group differences *and* correlation with individual differences.
limma regression
updated 7.4 years ago by 51k • written 7.4 years ago by ▴ 30
1
vote
2
replies
3.6k
views
Kernel Ridge Regression in R for Drug-Target Interaction
regression kernel ridge r
updated 7.8 years ago by • 0 • written 8.2 years ago by • 0
2
votes
23
replies
3.7k
views
Coping with a label/class imbalance in DESeq2
deseq2 rnaseq r regression
updated 7.8 years ago by 42k • written 7.8 years ago by • 0
11
votes
3
replies
1.8k
views
Fit a multinomial to RNA-seq count data
voom limma glm multinomial regression
updated 7.9 years ago by ★ 3.3k • written 7.9 years ago by ▴ 110
1
vote
5
replies
1.8k
views
deseq2 normalized data
regression deseq2 counts
updated 8.8 years ago by 42k • written 8.8 years ago by • 0
0
votes
1
reply
1.0k
views
GWASTools: quasi-/perfect linear separation
Regression
updated 9.8 years ago by ▴ 870 • written 9.8 years ago by ★ 13k
0
votes
2
replies
2.1k
views
UCSC data anomaly in 50638 transcript(s): the cds cumulative length is
Genetics GO Regression Cancer TranscriptDb Genetics GO Regression Cancer TranscriptDb
updated 10.1 years ago by ▴ 570 • written 10.1 years ago by 16k
0
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1
reply
1.5k
views
Choosing the kernel for SVM (regression) using rminer package
Regression Regression
updated 10.3 years ago by ★ 13k • written 10.3 years ago by ★ 13k
0
votes
1
reply
1.6k
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Support vector regression
Classification Regression Classification Regression
updated 10.3 years ago by ★ 13k • written 10.3 years ago by ★ 13k
0
votes
0
replies
1.5k
views
Data Analysis for Genomics, free HarvardX course, starts April 7
Regression Regression
10.3 years ago Michael Love 42k
0
votes
4
replies
2.5k
views
DESeq2 high fold change values for comparison of samples with zero counts
Regression DESeq DESeq2 Regression DESeq DESeq2
updated 10.4 years ago by 42k • written 10.4 years ago by ▴ 60
0
votes
3
replies
9.0k
views
ggplot2 error
Regression Regression
10.4 years ago Alyaa Mahmoud ▴ 440
2
votes
5
replies
15k
views
Limma design and contrast matrix question.
Microarray Regression limma Microarray Regression limma
updated 10.4 years ago by 66k • written 10.4 years ago by ▴ 370
0
votes
1
reply
1.6k
views
[MEDIPS] mergeFrames: `Error in rbind(output, cbind(chromosomes[i], new_start, new_stop)) `
Coverage Regression edgeR MEDIPS Coverage Regression edgeR MEDIPS
updated 10.5 years ago by ▴ 240 • written 10.5 years ago by ▴ 10
0
votes
2
replies
1.9k
views
[MEDIPS] Error in 1:max_signal_index : argument of length 0 - what does mean?
Preprocessing Regression MEDIPS Preprocessing Regression MEDIPS
updated 10.5 years ago by ▴ 570 • written 10.5 years ago by ▴ 20
0
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0
replies
1.7k
views
EdgeR Design matrix not of full rank. The following coefficients not estimable errorR
Regression edgeR Regression edgeR
10.5 years ago Gordon Smyth 51k
0
votes
0
replies
1.0k
views
EdgeR Design matrix not of full rank. The following coefficients not estimable errorR
Regression edgeR Regression edgeR
10.5 years ago Eugene Bolotin ▴ 20
0
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1
reply
1.7k
views
[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression Survival snpStats Regression Survival snpStats
10.6 years ago David Winsemius ▴ 40
0
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0
replies
3.6k
views
Inquiries about fitType on DESeq2
Regression DESeq2 Regression DESeq2
10.6 years ago Michael Love 42k
2
votes
2
replies
2.3k
views
[limma] [Rfit] [samr] Gene expression distribution using lmFit and eBayes
Microarray Regression Microarray Regression
updated 10.6 years ago by 51k • written 10.6 years ago by ▴ 30
0
votes
3
replies
3.7k
views
lower.limits and upper.limits in glmnet
Regression Regression
updated 10.7 years ago by ▴ 60 • written 10.7 years ago by ▴ 370
0
votes
0
replies
1.4k
views
CfP: CAMDA 2013 - 12th International Conference on Critical Assessment of Massive Data Analysis
Genetics Classification Regression Genetics Classification Regression
11.2 years ago CAMDA 2013 ▴ 30
0
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0
replies
1.2k
views
CAMDA 2013 Challenge: Big Data in Life Sciences
Sequencing Microarray Genetics Classification Clustering Regression Sequencing Microarray
11.3 years ago CAMDA 2013 ▴ 30
0
votes
10
replies
2.5k
views
assignChromosomeRegion in 2.6.0 ChIPpeakAnno
Microarray Annotation GO Network Regression Survival Infrastructure Escherichia coli ROC
11.3 years ago Julie Zhu ★ 4.3k
0
votes
2
replies
4.2k
views
edgeR choose the best model of GLM
Regression edgeR Regression edgeR
updated 11.4 years ago by 51k • written 11.4 years ago by ▴ 40
0
votes
7
replies
1.8k
views
affy code archeology: expresso behavior for liwong/invariantset
Regression gcrma Regression gcrma
updated 11.4 years ago by 66k • written 11.4 years ago by ★ 13k
0
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1
reply
1.0k
views
[R] lowess regression
Regression Regression
updated 11.8 years ago by ▴ 10 • written 11.8 years ago by ▴ 670
0
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0
replies
1.0k
views
lowess regression
Regression Regression
11.8 years ago Bogdan ▴ 670
1
vote
1
reply
7.2k
views
[LIMMA]lmFit with continuous predictor
Regression limma Regression limma
updated 12.0 years ago by ▴ 130 • written 12.0 years ago by ▴ 210
0
votes
3
replies
1.2k
views
edgeR and tagwise dispersion: overcorrection for multiple tests?
SAGE Regression edgeR BRAIN SAGE Regression edgeR BRAIN
updated 12.0 years ago by 25k • written 12.0 years ago by 51k
0
votes
0
replies
1.2k
views
edgeR and tagwise dispersion: overcorrection for multiple tests?
SAGE Regression edgeR BRAIN SAGE Regression edgeR BRAIN
12.0 years ago alessandro.guffanti@genomnia.com ▴ 330
0
votes
0
replies
1.1k
views
about edgeR
Regression Regression
12.0 years ago wang peter ★ 2.0k
0
votes
0
replies
1.5k
views
design and contrast matrix for limma time series without replicates
Microarray GO Regression limma Microarray GO Regression limma
12.1 years ago Chunxuan Shao ▴ 30
0
votes
0
replies
868
views
Outcome~predictor model evaluation, repeated measurements
Regression Regression
12.2 years ago rad mac ▴ 10
0
votes
0
replies
1.8k
views
edgeR-DeSeq - inconsistency between Variance and Coefficient of Variation
Regression edgeR DESeq Regression edgeR DESeq
12.3 years ago Gordon Smyth 51k
8
votes
3
replies
7.0k
views
Removing batch effects with sva and combat using the sva package
Regression limma sva Regression limma sva
updated 12.6 years ago by ▴ 60 • written 12.6 years ago by ▴ 650
0
votes
0
replies
1.3k
views
Use of glm for multivariate logistic regression of microarray data
Microarray Regression Microarray Regression
12.7 years ago Ruppert Valentino ▴ 270
0
votes
0
replies
811
views
Binomial regression of HTqPCR data
Regression HTqPCR Regression HTqPCR
12.7 years ago Christopher Howerton ▴ 40
0
votes
0
replies
934
views
Regression analysis using expression microarray to determine phenotypic correlation
Microarray Regression Microarray Regression
12.7 years ago Ruppert Valentino ▴ 270
50 results • Page 1 of 1
Recent ...
Replies
Comment: Ranking the GSEA Results by Lluís Revilla Sancho ▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction by Antonio • 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results by alserg ▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results by alserg ▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user) by shepherl 3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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Scholar to Gordon Smyth 51k
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