Bioconductor Reads

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664

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DiffBind Reads MACS2 FullLibSize

updated 3 months ago by Rory Stark ★ 5.2k • written 3 months ago by Marianna ▴ 20

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1.7k

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boxplot reads fastq sequencing rsubread

updated 5.4 years ago by Wei Shi ★ 3.6k • written 5.4 years ago by Raito92 ▴ 60

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1.1k

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rna-seq reads

updated 5.4 years ago by Gordon Smyth 51k • written 5.4 years ago by Ramiro Magno ▴ 100

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1.4k

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dexseq reads

7.4 years ago 514028929 • 0

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1.1k

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diffbind reads bamfiles

updated 7.6 years ago by Rory Stark ★ 5.2k • written 7.6 years ago by kbrnrc • 0

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2.0k

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genomicranges reads genomicfeatures Bam

9.6 years ago gen ▴ 30

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3.3k

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deseq filter reads

9.8 years ago ccheung • 0

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2.4k

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reads

updated 10.1 years ago by James W. MacDonald 67k • written 10.1 years ago by marcovth • 0

8 results • Page 1 of 1

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Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Thank you!

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

Awards • All

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k