Bioconductor RNAseq

Showing : RNAseq_Analysis • reset

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limma limma voom rnaseq_analysis DEG

6.8 years ago • updated 5.9 years ago SPbeginner • 0

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1.5k

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rnaseq_analysis KEGG nonmodel species

updated 6.3 years ago by James W. MacDonald 67k • written 6.3 years ago by laural710 • 0

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1.1k

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sequencing rnaseq_analysis

7.0 years ago alemutak • 0

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rnaseq_analysis

7.6 years ago fakhter1 • 0

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1.2k

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rnaseq_analysis

updated 8.3 years ago by Gordon Smyth 52k • written 8.3 years ago by kjo ▴ 70

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4.9k

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deseq2 rnaseq_analysis variancestabilizingtransformation confounders

updated 8.6 years ago by Michael Love 43k • written 8.7 years ago by ompandey ▴ 10

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limma RNAseq_Analysis model.matrix

updated 9.6 years ago by Aaron Lun ★ 28k • written 9.6 years ago by anver • 0

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Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Great thanks for posting the issue and sticking with it Annaleigh

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Awesome possum! Update works!! Thank you so much for the help and guidance!

Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0

Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/

Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k

> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Let me see if I can add some code to tximeta to cover this case. I've added an argument `skipRanges` in devel branch which should allow: …

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Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Answer: Limma Interaction Effect with Covariates

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