Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
RNAseq123
•
reset
0
votes
0
replies
263
views
Assistance with Bulk RNA-seq Data Analysis Including Random Effect (`duplicateCorrelation` from `limma`)
limma
RNAseq123
4 months ago
tim.meese
• 0
1
vote
2
replies
481
views
Improving the design matrices vignette in RNAseq123
RNAseq123
9 months ago
Lluís Revilla Sancho
▴ 760
1
vote
1
reply
678
views
Differential gene expression analysis
RNASeqData
RNAseq123
updated 14 months ago by
ATpoint
★ 4.6k • written 14 months ago by
kaurprab
• 0
0
votes
2
replies
870
views
Deseq2 paird analysis in a cohort mixed of paired and unpaired samples
DESeq2
RNAseq123
23 months ago
fatemeh.peimani
• 0
0
votes
3
replies
1.3k
views
DESeq2 Statistic - Padj NA
DESeq2
RNAseq123
rnaseq
deseq2
metatranscriptomic
updated 2.1 years ago by
Michael Love
43k • written 2.1 years ago by
irish.prg
• 0
1
vote
6
replies
4.9k
views
KEGG enrichment analysis for non model organism
RNAseq123
2.2 years ago
afsanarupa1
• 0
2
votes
5
replies
1.4k
views
Can we massively improve RNA-Seq results by slightly reducing the counts in it?
edgeR
RNAseq123
updated 2.2 years ago by
Gordon Smyth
52k • written 2.2 years ago by
Istvan Albert
▴ 50
0
votes
1
reply
2.1k
views
Confused about understanding the output and statistics of BAM file after STAR aligning
RNAseq123
VariantFiltering
Alignment
VariantAnnotation
updated 2.2 years ago by
James W. MacDonald
67k • written 2.2 years ago by
Mohamed
▴ 30
1
vote
1
reply
970
views
Confused about design for RNA seq experiment
RNAseq
ExperimentData
RNAseq123
RNA
ExperimentalDesign
updated 2.4 years ago by
ATpoint
★ 4.6k • written 2.4 years ago by
Mohamed
▴ 30
0
votes
0
replies
747
views
Plotting a line plot for genes across 4-species
RNAseq123
2.5 years ago
Mohamed
▴ 30
2
votes
1
reply
1.3k
views
Error in RNAseq123 analysis, unexpected symbol.
RNAseq123
Rna
updated 2.6 years ago by
Gordon Smyth
52k • written 2.6 years ago by
Mikołaj Mierzejewski
• 0
5
votes
6
replies
3.5k
views
Large difference in PCA plot based on LCPM (log counts per million) and VST (variance stabilizing transformations)
PCAtools
edgeR
pcaExplorer
RNASeq
RNAseq123
2.8 years ago
Alan
• 0
0
votes
1
reply
1.0k
views
python and R
snpeff
python
tophat
r
RNAseq123
updated 3.5 years ago by
Kevin Blighe
★ 4.0k • written 3.5 years ago by
kusum
• 0
1
vote
1
reply
1.9k
views
featureCounts running too long
RNAseq123
updated 12 months ago by
difraiadomenico
• 0 • written 3.9 years ago by
demirkalecy
▴ 10
0
votes
0
replies
687
views
Circular RNA
CircularRNA
RNASeq
RNAseq123
4.0 years ago
rpokhre2
• 0
1
vote
3
replies
5.5k
views
Using TMM normalized counts in Deseq2
RNAseq123
written 4.1 years ago by
mmicky5050
• 0
12
votes
4
replies
4.9k
views
differential expression analysis of htseq data with edgeR/voom
voom
htseq
edgeR
limma
RNASeq123
updated 6.1 years ago by
Gordon Smyth
52k • written 7.7 years ago by
wd
▴ 30
17 results • Page
1 of 1
Recent ...
Replies
Comment: Unused arguments error without used arguments in GSVA?
by
1sunmic2
• 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA?
by
Axel Klenk
★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Answer: Restricting differential binding analysis to only TSS-proximal regions
by
Aaron Lun
★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA
by
User3088
• 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function
by
iamin053
• 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Votes
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
Awards
• All
Teacher
to
Axel Klenk
★ 1.1k
Popular Question
to
shepherl
4.1k
Popular Question
to
Gordon Smyth
52k
Popular Question
to
bastien_chassagnol
• 0
Popular Question
to
Maria Doyle
▴ 100
Locations
• All
The city by the bay,
14 minutes ago
WEHI, Melbourne, Australia,
2 hours ago
United Arab Emirates,
5 hours ago
United States,
5 hours ago
Russia,
5 hours ago
Traffic: 618 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6