Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
RNASeq123
•
reset
0
votes
0
replies
254
views
Assistance with Bulk RNA-seq Data Analysis Including Random Effect (`duplicateCorrelation` from `limma`)
limma
RNAseq123
3 months ago
tim.meese
• 0
1
vote
2
replies
469
views
Improving the design matrices vignette in RNAseq123
RNAseq123
9 months ago • updated 8 months ago
Lluís Revilla Sancho
▴ 760
1
vote
1
reply
667
views
Differential gene expression analysis
RNASeqData
RNAseq123
updated 13 months ago by
ATpoint
★ 4.6k • written 13 months ago by
kaurprab
• 0
0
votes
2
replies
855
views
Deseq2 paird analysis in a cohort mixed of paired and unpaired samples
DESeq2
RNAseq123
23 months ago
fatemeh.peimani
• 0
0
votes
3
replies
1.2k
views
DESeq2 Statistic - Padj NA
DESeq2
RNAseq123
rnaseq
deseq2
metatranscriptomic
updated 2.1 years ago by
Michael Love
43k • written 2.1 years ago by
irish.prg
• 0
1
vote
6
replies
4.8k
views
KEGG enrichment analysis for non model organism
RNAseq123
2.1 years ago
afsanarupa1
• 0
2
votes
5
replies
1.3k
views
Can we massively improve RNA-Seq results by slightly reducing the counts in it?
edgeR
RNAseq123
updated 2.1 years ago by
Gordon Smyth
52k • written 2.2 years ago by
Istvan Albert
▴ 50
0
votes
1
reply
2.1k
views
Confused about understanding the output and statistics of BAM file after STAR aligning
RNAseq123
VariantFiltering
Alignment
VariantAnnotation
updated 2.2 years ago by
James W. MacDonald
67k • written 2.2 years ago by
Mohamed
▴ 30
1
vote
1
reply
953
views
Confused about design for RNA seq experiment
RNAseq
ExperimentData
RNAseq123
RNA
ExperimentalDesign
updated 2.3 years ago by
ATpoint
★ 4.6k • written 2.4 years ago by
Mohamed
▴ 30
0
votes
0
replies
739
views
Plotting a line plot for genes across 4-species
RNAseq123
2.5 years ago
Mohamed
▴ 30
2
votes
1
reply
1.3k
views
Error in RNAseq123 analysis, unexpected symbol.
RNAseq123
Rna
updated 2.6 years ago by
Gordon Smyth
52k • written 2.6 years ago by
Mikołaj Mierzejewski
• 0
5
votes
6
replies
3.4k
views
Large difference in PCA plot based on LCPM (log counts per million) and VST (variance stabilizing transformations)
PCAtools
edgeR
pcaExplorer
RNASeq
RNAseq123
2.8 years ago
Alan
• 0
0
votes
1
reply
1.0k
views
python and R
snpeff
python
tophat
r
RNAseq123
updated 3.5 years ago by
Kevin Blighe
★ 4.0k • written 3.5 years ago by
kusum
• 0
1
vote
1
reply
1.9k
views
featureCounts running too long
RNAseq123
updated 11 months ago by
difraiadomenico
• 0 • written 3.9 years ago by
demirkalecy
▴ 10
0
votes
0
replies
677
views
Circular RNA
CircularRNA
RNASeq
RNAseq123
3.9 years ago
rpokhre2
• 0
1
vote
3
replies
5.5k
views
Using TMM normalized counts in Deseq2
RNAseq123
written 4.0 years ago by
mmicky5050
• 0
12
votes
4
replies
4.9k
views
differential expression analysis of htseq data with edgeR/voom
voom
htseq
edgeR
limma
RNASeq123
updated 6.0 years ago by
Gordon Smyth
52k • written 7.6 years ago by
wd
▴ 30
17 results • Page
1 of 1
Recent ...
Replies
Answer: Curiously shaped volcano plot with using oarfish + swish to do differential gene
by
Michael Love
43k
See swish vignette, these are explained.
Comment: Problems with oarfish + tximport + swish
by
Michael Love
43k
Great thanks for posting the issue and sticking with it Annaleigh
Comment: Problems with oarfish + tximport + swish
by
brown.annaleigh
• 0
Awesome possum! Update works!! Thank you so much for the help and guidance!
Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal
by
iqratechnology4
• 0
Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/
Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
by
James W. MacDonald
67k
> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…
Votes
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Answer: Limma Interaction Effect with Covariates
Awards
• All
Popular Question
to
Gordon Smyth
52k
Popular Question
to
Bob
▴ 10
Popular Question
to
shepherl
4.1k
Scholar
to
James W. MacDonald
67k
Popular Question
to
Assa Yeroslaviz
★ 1.5k
Locations
• All
United States,
9 minutes ago
United Kingdom,
1 hour ago
Singapore,
3 hours ago
The city by the bay,
6 hours ago
WEHI, Melbourne, Australia,
8 hours ago
Traffic: 429 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6