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Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
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yf
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![enter image description here][1]
[1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
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Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
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Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms.
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