Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
RMA
•
reset
0
votes
5
replies
1.5k
views
oligo rma() background normalization crash in basicRMA()
basicRMA
crash
rma
oligo
23 months ago
Steffen Moeller
▴ 90
1
vote
1
reply
1.1k
views
Strange error with RMA during Affymetrix data analysis
AffymetrixChip
RMA
updated 2.2 years ago by
Mike Smith
★ 6.6k • written 2.2 years ago by
Sara
▴ 20
4
votes
6
replies
1.6k
views
RMA on different disease labels
rma
background
microarray
normalization
updated 3.3 years ago by
James W. MacDonald
68k • written 3.3 years ago by
Joshua
• 0
1
vote
2
replies
1.4k
views
oligo package blas error
rma
openblas
blas
oligo
3.4 years ago
ch_el
▴ 10
0
votes
2
replies
1.4k
views
Ask for help on the preprocessing of GEO microarray data with Oligo and affy package
affy
rma
frma
oligo
updated 5.2 years ago by
James W. MacDonald
68k • written 5.2 years ago by
chziy429
• 0
1
vote
1
reply
669
views
RMA for multiple samples
biostatistic
RMA
updated 5.4 years ago by
James W. MacDonald
68k • written 5.4 years ago by
ijvechetti
▴ 10
0
votes
5
replies
2.5k
views
Install a custom CDF file
makecdf
RMA
annotation
biobase
GEOquery
updated 5.6 years ago by
James W. MacDonald
68k • written 5.6 years ago by
Seymoo
• 0
0
votes
2
replies
1.2k
views
R: rma() function error
rma
normalization
microarray
updated 5.6 years ago by
James W. MacDonald
68k • written 5.6 years ago by
get3232
• 0
1
vote
2
replies
1.7k
views
Inconsistent results when normalizing HTA2.0 arrays at "level=core"
oligo
HTA2.0
affycoretools
RMA
fitProbeLevelModel
updated 5.6 years ago by
James W. MacDonald
68k • written 5.6 years ago by
Guido Hooiveld
★ 4.1k
2
votes
5
replies
1.4k
views
Error in get(cdfname, object 'mm430mmentrezgcdf' not found
affy
cdf
rma
updated 6.2 years ago by
Guido Hooiveld
★ 4.1k • written 6.2 years ago by
Walter Jessen
• 0
1
vote
0
replies
1.7k
views
Problems running oligo functions in parallel on a linux computer
biocparallel
oligo
rma
linux
parallel
7.1 years ago
s.munster
▴ 40
0
votes
5
replies
2.1k
views
Probe summerization of Human HT-12 V4 BeadChip arrays
beadarray
bead chip
illuminahumanv4.db
normalization
RMA
updated 7.2 years ago by
James W. MacDonald
68k • written 7.2 years ago by
Seymoo
• 0
0
votes
1
reply
1.5k
views
oligo rma() function giving unused argument error
oligo
rma
updated 7.8 years ago by
James W. MacDonald
68k • written 7.8 years ago by
Jiayi Sun
▴ 40
0
votes
3
replies
3.4k
views
how to use log2 transformation and limma
RMA
normalization
7.9 years ago
nia
▴ 30
2
votes
1
reply
1.8k
views
BrainArray Custom CDFs and oligo
oligo
brainarray
rma
customcdf
updated 8.0 years ago by
James W. MacDonald
68k • written 8.0 years ago by
lcordeiro
• 0
2
votes
1
reply
1.2k
views
perform probe level RMA without summarization
u133a
normalization
rma
affy
updated 8.1 years ago by
James W. MacDonald
68k • written 8.1 years ago by
jxd_84
▴ 10
0
votes
1
reply
1.0k
views
Microarray normalization---RMA and / or centering+scaling?
microarray
normalization
rma
updated 8.4 years ago by
James W. MacDonald
68k • written 8.4 years ago by
michaericalribo
• 0
3
votes
3
replies
3.0k
views
Problem using RMA Method in 'Oligo' with HTAFeatureset Objects
affymetrix microarrays
microarray
pd.hta.2.0
oligo
rma
updated 8.9 years ago by
James W. MacDonald
68k • written 8.9 years ago by
jennifer.drake
• 0
2
votes
3
replies
2.7k
views
RAW data in matrix: RMA normalization?
RMA
affy
raw expression
updated 9.1 years ago by
James W. MacDonald
68k • written 9.1 years ago by
alexvpickering
▴ 110
0
votes
1
reply
2.0k
views
PLIER normalization for Affymetrix GeneChip arrays?
microarray
affymetrix
oligo
RMA
normalization
updated 9.2 years ago by
James W. MacDonald
68k • written 9.2 years ago by
Nathaniel
▴ 20
0
votes
1
reply
1.8k
views
Error when running "eset <- rma(affyRaw)"
rma
updated 9.2 years ago by
Axel Klenk
★ 1.1k • written 9.2 years ago by
mochammad.ichsan87
• 0
0
votes
1
reply
1.1k
views
Looking for a package allowing Affymetrix MoGene2.1ST processing
affy
xps
rma
oligo
updated 9.2 years ago by
Guido Hooiveld
★ 4.1k • written 9.2 years ago by
steppydeklin
▴ 10
0
votes
2
replies
2.2k
views
Error with Normalization using (rma) method !!!
normalization
rma
updated 9.2 years ago by
James W. MacDonald
68k • written 9.2 years ago by
libya.tahani
• 0
2
votes
5
replies
6.0k
views
Oligo package RMA() function giving error
oligo
rma
updated 9.5 years ago by
Benilton Carvalho
★ 4.3k • written 9.5 years ago by
Jo
▴ 30
1
vote
7
replies
3.1k
views
reading a *.txt file of expression values into an AffyBatch
affy
normalization
rma
updated 9.6 years ago by
James W. MacDonald
68k • written 9.6 years ago by
m
• 0
1
vote
4
replies
1.7k
views
mutually add a tab in the beggining of the header to make it a valid RMA format
software error
probe
affy
RMA
9.6 years ago
Angel
▴ 40
0
votes
1
reply
1.9k
views
Reading in and normalising ht-hgu133a and hgu133a files together
hgu133a
rma
normalization
affy
updated 9.8 years ago by
svlachavas
▴ 840 • written 9.8 years ago by
parisa_1986
• 0
27 results • Page
1 of 1
Recent ...
Replies
Comment: error in ChAMP loading file
by
81becky
• 0
hi Giulia, it sounds like you're facing a frustating issue with your chAMP import. One common suggestion is to double-check your CSV fomat…
Answer: DESeq2 adujsted p-value cutoff seemingly not working
by
James W. MacDonald
68k
From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…
Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
by
SofieK
• 0
Thank you, I will try this and see.
Comment: DiffBind - question on the use of filtered or unfiltered input data
by
deltaexploitss
• 0
Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…
Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status
by
Renuka
• 0
how you did it pls explain
Votes
A: Effect of lfcThreshold on p-value in DESeq2
Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
Comment: Unused arguments error without used arguments in GSVA?
Awards
• All
Teacher
to
Gordon Smyth
52k
Scholar
to
James W. MacDonald
68k
Popular Question
to
Sara
▴ 20
Scholar
to
Michael Love
43k
Popular Question
to
Malcolm Cook
★ 1.6k
Locations
• All
Germany,
23 minutes ago
Singapore,
57 minutes ago
The city by the bay,
1 hour ago
India,
1 hour ago
India,
2 hours ago
Traffic: 819 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6