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RLE
•
reset
1
vote
1
reply
1.1k
views
deseq2 RLE normalization
RLE
normalization
deseq2
updated 15 months ago by
ATpoint
★ 4.2k • written 15 months ago by
SH
• 0
0
votes
1
reply
919
views
Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4
Rcpp
InteractionSet
IRanges
Rle
updated 4.1 years ago by
Aaron Lun
★ 28k • written 4.1 years ago by
lklei001
• 0
0
votes
1
reply
1.7k
views
RLE plot of DESeq2 normalisation / extract matrix of normalised counts from DESeqDataSet
deseq2
RLE
updated 4.4 years ago by
Michael Love
42k • written 4.4 years ago by
f_pardow
• 0
0
votes
2
replies
1.2k
views
Error: invalid class "VRanges" object
variantannotation
VRanges
R
Rle
updated 6.0 years ago by
Valerie Obenchain
★ 6.8k • written 6.0 years ago by
Jayendra Shinde
• 0
0
votes
0
replies
1000
views
Avoid rotating vector when doing arithmetic on different length IRanges RleList entries
iranges
s4vectors
rle
rlelist
6.0 years ago
endrebak85
▴ 40
1
vote
1
reply
3.1k
views
What does the relative-log expression normalization mean in the deseq2 wrapper function ?
rle
deseq2
normalization
updated 6.1 years ago by
Michael Love
42k • written 6.1 years ago by
Aurora
▴ 20
1
vote
1
reply
1.2k
views
Subsetting Rle with ORF-sequence-positions by the 3 frames
Rle
Big data
coverageByTranscript
6.2 years ago
hauken_heyken
▴ 80
7
votes
4
replies
1.7k
views
From RleList to RleArray
delayedarray
rlelist
rle
updated 6.7 years ago by
Peter Hickey
▴ 740 • written 6.7 years ago by
davide risso
▴ 950
2
votes
4
replies
1.5k
views
Generic functions for DataFrames of Rle objects ?
DataFrame
Rle
generic
expression table
updated 12 months ago by
Hervé Pagès
16k • written 7.1 years ago by
Charles Plessy
▴ 180
0
votes
3
replies
1.6k
views
Efficiently construct GRanges/IRanges from Rle vector
Rle
granges
iranges
7.8 years ago
my4
▴ 10
0
votes
1
reply
1.6k
views
Efficient coverage calculation with RleList and GRanges
granges
Rle
coverage
View
mean
updated 8.0 years ago by
Michael Lawrence
★ 11k • written 8.0 years ago by
Christian Ruckert
▴ 170
6
votes
3
replies
2.5k
views
how does coverage() works
biostrings
coverage
rle
iranges
8.1 years ago
likeeatingpizza
▴ 10
0
votes
1
reply
1.4k
views
extract RLE normalized table
rle
normalization
table
updated 8.7 years ago by
Steve Lianoglou
★ 13k • written 8.7 years ago by
aiko
• 0
3
votes
7
replies
2.1k
views
Add up RLEs that are in lists?
RLE
GenomicFeatures
rnaseq
updated 9.2 years ago by
Hervé Pagès
16k • written 9.2 years ago by
gen
▴ 30
2
votes
6
replies
2.8k
views
Shrink or Expand RLE
RLE
iranges
granges
coverage
updated 9.3 years ago by
Martin Morgan
25k • written 9.3 years ago by
gen
▴ 30
2
votes
4
replies
1.9k
views
summing integer RLE
rle
list
irange
grangeslist
updated 9.3 years ago by
Chris Seidel
▴ 80 • written 9.3 years ago by
gen
▴ 30
1
vote
2
replies
1.2k
views
Summary statistics of RleListViews object
rle
Views
9.4 years ago
Sean Davis
21k
2
votes
5
replies
1.5k
views
making a RleViewsList object gets slow with many chromosomes
views
iranges
rle
9.4 years ago
Janet Young
▴ 740
1
vote
1
reply
2.3k
views
Computing NUSE and RLE scores
affyPLM
RLE
NUSE
updated 9.4 years ago by
Sean Davis
21k • written 9.4 years ago by
beverly893
▴ 10
0
votes
2
replies
1.2k
views
boxplot on an Rle object?
Rle
boxplot
9.4 years ago
Johannes Rainer
★ 2.1k
20 results • Page
1 of 1
Recent ...
Replies
Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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