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RLE
•
reset
2
votes
1
reply
1.7k
views
deseq2 RLE normalization
RLE
normalization
deseq2
updated 2.1 years ago by
ATpoint
★ 4.8k • written 2.1 years ago by
SH
▴ 10
0
votes
1
reply
1.3k
views
Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4
Rcpp
InteractionSet
IRanges
Rle
updated 4.8 years ago by
Aaron Lun
★ 28k • written 4.8 years ago by
lklei001
• 0
0
votes
1
reply
2.2k
views
RLE plot of DESeq2 normalisation / extract matrix of normalised counts from DESeqDataSet
deseq2
RLE
updated 5.2 years ago by
Michael Love
43k • written 5.2 years ago by
f_pardow
• 0
0
votes
2
replies
1.5k
views
Error: invalid class "VRanges" object
variantannotation
VRanges
R
Rle
updated 6.8 years ago by
Valerie Obenchain
★ 6.8k • written 6.8 years ago by
Jayendra Shinde
• 0
0
votes
0
replies
1.2k
views
Avoid rotating vector when doing arithmetic on different length IRanges RleList entries
iranges
s4vectors
rle
rlelist
6.8 years ago
endrebak85
▴ 40
1
vote
1
reply
3.7k
views
What does the relative-log expression normalization mean in the deseq2 wrapper function ?
rle
deseq2
normalization
updated 6.9 years ago by
Michael Love
43k • written 6.9 years ago by
Aurora
▴ 20
1
vote
1
reply
1.4k
views
Subsetting Rle with ORF-sequence-positions by the 3 frames
Rle
Big data
coverageByTranscript
7.0 years ago
hauken_heyken
▴ 80
7
votes
4
replies
1.9k
views
From RleList to RleArray
delayedarray
rlelist
rle
updated 7.4 years ago by
Peter Hickey
▴ 750 • written 7.4 years ago by
davide risso
▴ 980
2
votes
4
replies
1.8k
views
Generic functions for DataFrames of Rle objects ?
DataFrame
Rle
generic
expression table
updated 21 months ago by
Hervé Pagès
16k • written 7.9 years ago by
Charles Plessy
▴ 180
0
votes
3
replies
2.0k
views
Efficiently construct GRanges/IRanges from Rle vector
Rle
granges
iranges
8.5 years ago
my4
▴ 10
0
votes
1
reply
1.9k
views
Efficient coverage calculation with RleList and GRanges
granges
Rle
coverage
View
mean
updated 8.8 years ago by
Michael Lawrence
★ 11k • written 8.8 years ago by
Christian Ruckert
▴ 170
6
votes
3
replies
3.2k
views
how does coverage() works
biostrings
coverage
rle
iranges
8.9 years ago
likeeatingpizza
▴ 10
0
votes
1
reply
1.6k
views
extract RLE normalized table
rle
normalization
table
updated 9.5 years ago by
Steve Lianoglou
★ 13k • written 9.5 years ago by
aiko
• 0
3
votes
7
replies
2.4k
views
Add up RLEs that are in lists?
RLE
GenomicFeatures
rnaseq
updated 10.0 years ago by
Hervé Pagès
16k • written 10.0 years ago by
gen
▴ 30
2
votes
6
replies
3.1k
views
Shrink or Expand RLE
RLE
iranges
granges
coverage
updated 10.0 years ago by
Martin Morgan
25k • written 10.0 years ago by
gen
▴ 30
2
votes
4
replies
2.3k
views
summing integer RLE
rle
list
irange
grangeslist
updated 10.0 years ago by
Chris Seidel
▴ 80 • written 10.0 years ago by
gen
▴ 30
1
vote
2
replies
1.4k
views
Summary statistics of RleListViews object
rle
Views
10.1 years ago
Sean Davis
21k
2
votes
5
replies
1.7k
views
making a RleViewsList object gets slow with many chromosomes
views
iranges
rle
10.2 years ago
Janet Young
▴ 740
1
vote
1
reply
2.6k
views
Computing NUSE and RLE scores
affyPLM
RLE
NUSE
updated 10.2 years ago by
Sean Davis
21k • written 10.2 years ago by
beverly893
▴ 10
0
votes
2
replies
1.4k
views
boxplot on an Rle object?
Rle
boxplot
10.2 years ago
Johannes Rainer
★ 2.1k
20 results • Page
1 of 1
Recent ...
Replies
Answer: WGCNA
by
ATpoint
★ 4.8k
> I would like to ask whether it would make sense to first normalize the count data using DESeq2 and VST before performing WGCNA. This …
Answer: cannot download atena annotation for human
by
Robert Castelo
★ 3.4k
Hi, sorry for the delay in getting back to you, probably by now you found the solution yourself, but just in case you didn't or anybody els…
Answer: Comparison of results obtained from a subset of the data versus the complete dat
by
swbarnes2
★ 1.4k
In general, using the entire dataset and then just comparing the subgroups you want within the whole dataset is preferable.
Comment: Differential expression analysis using two TCGA datasets
by
ATpoint
★ 4.8k
If these are two different batches then they're fully confounded making it statistically invalid. Biologically, I find it at least question…
Answer: PhD scholar
by
ATpoint
★ 4.8k
Hi, please consider asking this at biostars.org as here we're mainly answering precise technical questions towards the packages. You are se…
Votes
Answer: Origin of the labels for the SingleCellMultiModal dataset
Answer: PhD scholar
Answer: how to use `arrayWeightsQuick()`?
Answer: how to use `arrayWeightsQuick()`?
Having Trouble Using CNE12() and CNE21() in CNEr
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Robert Castelo
★ 3.4k
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Ariel Chernomoretz
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