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RLE
•
reset
2
votes
1
reply
1.6k
views
deseq2 RLE normalization
RLE
normalization
deseq2
updated 23 months ago by
ATpoint
★ 4.6k • written 23 months ago by
SH
▴ 10
0
votes
1
reply
1.2k
views
Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4
Rcpp
InteractionSet
IRanges
Rle
updated 4.7 years ago by
Aaron Lun
★ 28k • written 4.7 years ago by
lklei001
• 0
0
votes
1
reply
2.1k
views
RLE plot of DESeq2 normalisation / extract matrix of normalised counts from DESeqDataSet
deseq2
RLE
updated 5.0 years ago by
Michael Love
43k • written 5.0 years ago by
f_pardow
• 0
0
votes
2
replies
1.4k
views
Error: invalid class "VRanges" object
variantannotation
VRanges
R
Rle
updated 6.6 years ago by
Valerie Obenchain
★ 6.8k • written 6.6 years ago by
Jayendra Shinde
• 0
0
votes
0
replies
1.2k
views
Avoid rotating vector when doing arithmetic on different length IRanges RleList entries
iranges
s4vectors
rle
rlelist
6.6 years ago
endrebak85
▴ 40
1
vote
1
reply
3.5k
views
What does the relative-log expression normalization mean in the deseq2 wrapper function ?
rle
deseq2
normalization
updated 6.7 years ago by
Michael Love
43k • written 6.7 years ago by
Aurora
▴ 20
1
vote
1
reply
1.4k
views
Subsetting Rle with ORF-sequence-positions by the 3 frames
Rle
Big data
coverageByTranscript
6.8 years ago
hauken_heyken
▴ 80
7
votes
4
replies
1.9k
views
From RleList to RleArray
delayedarray
rlelist
rle
updated 7.3 years ago by
Peter Hickey
▴ 750 • written 7.3 years ago by
davide risso
▴ 980
2
votes
4
replies
1.7k
views
Generic functions for DataFrames of Rle objects ?
DataFrame
Rle
generic
expression table
updated 19 months ago by
Hervé Pagès
16k • written 7.7 years ago by
Charles Plessy
▴ 180
0
votes
3
replies
1.9k
views
Efficiently construct GRanges/IRanges from Rle vector
Rle
granges
iranges
8.4 years ago
my4
▴ 10
0
votes
1
reply
1.8k
views
Efficient coverage calculation with RleList and GRanges
granges
Rle
coverage
View
mean
updated 8.6 years ago by
Michael Lawrence
★ 11k • written 8.6 years ago by
Christian Ruckert
▴ 170
6
votes
3
replies
3.0k
views
how does coverage() works
biostrings
coverage
rle
iranges
8.7 years ago
likeeatingpizza
▴ 10
0
votes
1
reply
1.6k
views
extract RLE normalized table
rle
normalization
table
updated 9.3 years ago by
Steve Lianoglou
★ 13k • written 9.3 years ago by
aiko
• 0
3
votes
7
replies
2.3k
views
Add up RLEs that are in lists?
RLE
GenomicFeatures
rnaseq
updated 9.8 years ago by
Hervé Pagès
16k • written 9.8 years ago by
gen
▴ 30
2
votes
6
replies
3.0k
views
Shrink or Expand RLE
RLE
iranges
granges
coverage
updated 9.9 years ago by
Martin Morgan
25k • written 9.9 years ago by
gen
▴ 30
2
votes
4
replies
2.2k
views
summing integer RLE
rle
list
irange
grangeslist
updated 9.9 years ago by
Chris Seidel
▴ 80 • written 9.9 years ago by
gen
▴ 30
1
vote
2
replies
1.3k
views
Summary statistics of RleListViews object
rle
Views
10.0 years ago
Sean Davis
21k
2
votes
5
replies
1.7k
views
making a RleViewsList object gets slow with many chromosomes
views
iranges
rle
10.0 years ago
Janet Young
▴ 740
1
vote
1
reply
2.6k
views
Computing NUSE and RLE scores
affyPLM
RLE
NUSE
updated 10.0 years ago by
Sean Davis
21k • written 10.0 years ago by
beverly893
▴ 10
0
votes
2
replies
1.3k
views
boxplot on an Rle object?
Rle
boxplot
10.0 years ago
Johannes Rainer
★ 2.1k
20 results • Page
1 of 1
Recent ...
Replies
Answer: DESeq2 adujsted p-value cutoff seemingly not working
by
James W. MacDonald
68k
From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…
Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
by
SofieK
• 0
Thank you, I will try this and see.
Comment: DiffBind - question on the use of filtered or unfiltered input data
by
deltaexploitss
• 0
Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…
Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status
by
Renuka
• 0
how you did it pls explain
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
by
James W. MacDonald
68k
If I understand correctly, you want to assess differential transcript abundances. If so, there are a couple of ways you can do that. One wa…
Votes
A: Effect of lfcThreshold on p-value in DESeq2
Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
Comment: Unused arguments error without used arguments in GSVA?
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