Bioconductor R update

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bioconductor biocgenerics ubuntu package updates r update

7.2 years ago siinemselvi • 0

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clusterprofiler package installation r update

updated 7.7 years ago by tjiagoM ▴ 10 • written 7.7 years ago by klv2706w ▴ 10

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r update upgrade bioclite

updated 8.2 years ago by James W. MacDonald 67k • written 8.2 years ago by Lna • 0

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r update

updated 9.5 years ago by Martin Morgan 25k • written 9.5 years ago by filip.roudnicky • 0

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biocinstaller r update

9.8 years ago meeta.mistry ▴ 30

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upgrade r update

updated 9.8 years ago by Dan Tenenbaum ★ 8.2k • written 9.8 years ago by daniil.sarkisyan ▴ 10

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R update

updated 10.2 years ago by James W. MacDonald 67k • written 10.2 years ago by AJC ▴ 10

7 results • Page 1 of 1

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Comment: Csaw normalization strategies - general inquiry by Luca • 0

Hello Aaron, About the IP efficiencies, yes definitely and for us, to complicate this experiment further, these batches were generated by …

Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by Quang NN ▴ 10

Thank you ATpoint for your response. In bulkRNAseq, I did have two cell types to compare. But, I want to also see if bulkRNAseq might have …

Answer: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k

The choice of variable genes is typically part of a QC process. You select genes that in an unbiased fashion (unbiased because variance cal…

Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by ATpoint ★ 4.6k

My take is that RNA-seq (be it bulk or single-cell) is inherently relative. I don't think you can really "compare" the absolute expression …

Answer: Csaw normalization strategies - general inquiry by Aaron Lun ★ 28k

IIUC you're saying that 68 and 71 are more similar to each other than to all of the other replicates (more efficient IP, if I'm reading you…

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Answer: Csaw normalization strategies - general inquiry

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

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