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Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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Hi Xiaofei,
Is it possible to generate a matrix of beta values or M-values with rownames as probe IDs from this data? If so, cpg.annotate(…
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Gordon Smyth
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That looks basically correct, although the terms that you are inputing to `makeContrasts` do not match the condition names in the targets f…
Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
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James W. MacDonald
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Oh, right. There's two ways to enter code. If you are in the middle of a sentence and you want to include a function name, you wrap the nam…
Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
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Thank you James, that really helped! I tried CODE `enter code here` but I must have dome it incorrectly, as it showed all in red.
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Please come back to the support site and view your post - I've fixed it for you. If you want to show people your targets file, just paste t…
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