Bioconductor QualityControl

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QualityControl methylationArrayAnalysis

3.2 years ago zusman • 0

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QualityControl Alignment QuasR

updated 4.2 years ago by Michael Stadler ▴ 350 • written 4.2 years ago by h.kozlowski • 0

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792

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folder quality QualityControl AffyExpress

4.3 years ago bastien_chassagnol • 0

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qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix

updated 7.6 years ago by James W. MacDonald 68k • written 7.6 years ago by n.lu • 0

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qualitycontrol

updated 8.1 years ago by Mike Smith ★ 6.6k • written 8.1 years ago by XIA.PAN ▴ 20

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shinymethyl minfi epic microarray methylationepic qualitycontrol

8.1 years ago chelsey.ju • 0

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limma one colour agilent microarrays qualitycontrol arrayqualitymetrics

8.4 years ago Bouzid.a ▴ 20

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GWASTools qualitycontrol HumanOmni5-4BeadChip GenomeStudio illumina

updated 8.9 years ago by Stephanie M. Gogarten ▴ 890 • written 8.9 years ago by Lna • 0

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NUSE qualitycontrol microarray

updated 9.2 years ago by Diego Diez ▴ 760 • written 9.2 years ago by jacorvar ▴ 40

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rna-seq GC-Content qualitycontrol

updated 9.4 years ago by Matthew McCormack ▴ 180 • written 9.4 years ago by NS ▴ 60

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limma affy probe qualitycontrol design and contrast matrix

updated 10.3 years ago by Gordon Smyth 52k • written 10.3 years ago by alakatos ▴ 130

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Microarray OneChannel TwoChannel DifferentialExpression Preprocessing QualityControl affy

17.9 years ago Amin Moghaddasi ▴ 130

12 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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