Bioconductor QualityControl

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QualityControl methylationArrayAnalysis

3.2 years ago zusman • 0

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QualityControl Alignment QuasR

updated 4.2 years ago by Michael Stadler ▴ 350 • written 4.2 years ago by h.kozlowski • 0

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folder quality QualityControl AffyExpress

4.4 years ago bastien_chassagnol • 0

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qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix

updated 7.7 years ago by James W. MacDonald 68k • written 7.7 years ago by n.lu • 0

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qualitycontrol

updated 8.1 years ago by Mike Smith ★ 6.6k • written 8.1 years ago by XIA.PAN ▴ 20

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shinymethyl minfi epic microarray methylationepic qualitycontrol

8.2 years ago chelsey.ju • 0

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limma one colour agilent microarrays qualitycontrol arrayqualitymetrics

8.5 years ago Bouzid.a ▴ 20

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GWASTools qualitycontrol HumanOmni5-4BeadChip GenomeStudio illumina

updated 9.0 years ago by Stephanie M. Gogarten ▴ 890 • written 9.0 years ago by Lna • 0

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NUSE qualitycontrol microarray

updated 9.3 years ago by Diego Diez ▴ 760 • written 9.3 years ago by jacorvar ▴ 40

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rna-seq GC-Content qualitycontrol

updated 9.5 years ago by Matthew McCormack ▴ 180 • written 9.5 years ago by NS ▴ 60

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limma affy probe qualitycontrol design and contrast matrix

updated 10.3 years ago by Gordon Smyth 52k • written 10.3 years ago by alakatos ▴ 130

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Microarray OneChannel TwoChannel DifferentialExpression Preprocessing QualityControl affy

17.9 years ago Amin Moghaddasi ▴ 130

12 results • Page 1 of 1

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Comment: CluserProfiler message "No gene can be mapped" by Carolina • 0

There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…

Comment: Differing results with DESeq2 by JKim • 0

My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …

Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k

Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…

Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k

This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…

Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80

Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…

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remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

How to remove X & Y chromosome genes from RNAseq data

Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?

A: Unbalanced experiment with multiple samples from each patient.

A: Understanding contrasts limma

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