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TnSeq as ZINB? Alternatives in R?
DESeq2 R edgeR Python TnSeq
updated 23 months ago by • 0 • written 2.0 years ago by ▴ 90
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Job: Bioconductor Core developers group opening
R cloud github python git
2.3 years ago Vincent J. Carey, Jr. 6.7k
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Change the interval of bed file
mappability bed python
updated 2.9 years ago by 67k • written 2.9 years ago by • 0
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python and R
snpeff python tophat r RNAseq123
updated 3.4 years ago by ★ 4.0k • written 3.4 years ago by • 0
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AWS BigData Engineer python
3.6 years ago Ewa • 0
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DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq python gtf gff3 annotation
4.6 years ago Raito92 ▴ 60
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Load data with rhdf5
rhdf5 python
updated 21 months ago by • 0 • written 4.6 years ago by • 0
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Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
R python normalization matrix
updated 5.3 years ago by ▴ 30 • written 5.3 years ago by ▴ 10
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Job: Bioinformatics Analyst II, Genomics Shared Resource (Seattle, WA)
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5.3 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R Python Computational-Biology Cancer Job
5.7 years ago Shamith.Samarajiwa ▴ 180
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Job: Bioinformatics Scientist II
bioinformatics scientist python computational Job
5.8 years ago careers • 0
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Job: 2 Postdoc Positions in computational epigenetics and non-coding RNA analysis (#CNPD08)
bioinformatician job rna-seq chipseq gsea python Job
6.3 years ago l.brown ▴ 10
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Python functionality feature request
python bioconductor
updated 6.3 years ago by 25k • written 6.3 years ago by • 0
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Job: Bioinformatics Engineer / Data Analyst
python bio ngs linux Job
6.7 years ago EMBL Recruitment • 0
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Job: Full-time bioinformatics instructor position at Fred Hutch
R shell Python SQL Job
6.8 years ago ematsen ▴ 20
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Job: Summer Studentships in Data Science (Computational Cancer Biology) at the University of Cambridge
R python deep learning machine learning cancer genomics Job
7.7 years ago Shamith.Samarajiwa ▴ 180
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Job: Data Scientist / Bioinformatician / Statistician at University of California
R python stats bioinformatics perl Job
8.3 years ago clif.duhn • 0
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Job: Bioinformatics Programmer (Statistician) at University of California at San Francisco
R bioinformatician job Perl Python statistics Job
8.6 years ago • updated 8.3 years ago clif.duhn • 0
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Job: Harvard Medical School: Biomedical Data Scientist Postdoctoral Associate
biomedical informatics data science python SQL Job
8.8 years ago Doe, Aimee ▴ 40
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23
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Convertion of indexed bam file to tsv file format
python samtools
updated 9.1 years ago by 16k • written 9.2 years ago by • 0
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DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq splicing python SAM
9.1 years ago Fiona ▴ 70
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4
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1.9k
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seq2pathway error on Mac OS X
seq2pathway error python mac os x
9.2 years ago termanini ▴ 10
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Job: Calling all Clinical Genomic Scientist
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9.4 years ago careers • 0
23 results • Page 1 of 1
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Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Aaron Lun ★ 28k
You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…
Comment: contrast matrix design for a continuous variable by dtzhu337 • 0
Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…
Answer: contrast matrix design for a continuous variable by Gordon Smyth 52k
Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …
Comment: fail to use addPerROIQC in Rmd by liu.n • 0
That's odd. So it can run successfully within markdown but would be failed when knitting?
Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0
> dim(spe) [1] 19962 425
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Answer: contrast matrix design for a continuous variable
A: What's the difference between p.adjust and qvalue?
Answer: DESeq2- merging technical vs biological replicates
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
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