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TnSeq as ZINB? Alternatives in R?
DESeq2 R edgeR Python TnSeq
updated 2.1 years ago by • 0 • written 2.2 years ago by ▴ 90
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Job: Bioconductor Core developers group opening
R cloud github python git
2.4 years ago Vincent J. Carey, Jr. 6.7k
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Change the interval of bed file
mappability bed python
updated 3.0 years ago by 67k • written 3.0 years ago by • 0
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python and R
snpeff python tophat r RNAseq123
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Job: Senior Data Engineer | Poland | remote
AWS BigData Engineer python
3.7 years ago Ewa • 0
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DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq python gtf gff3 annotation
4.7 years ago Raito92 ▴ 60
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Load data with rhdf5
rhdf5 python
updated 23 months ago by • 0 • written 4.7 years ago by • 0
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Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
R python normalization matrix
updated 5.4 years ago by ▴ 30 • written 5.4 years ago by ▴ 10
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Job: Bioinformatics Analyst II, Genomics Shared Resource (Seattle, WA)
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5.4 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R Python Computational-Biology Cancer Job
5.8 years ago Shamith.Samarajiwa ▴ 180
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Job: Bioinformatics Scientist II
bioinformatics scientist python computational Job
6.0 years ago careers • 0
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Job: 2 Postdoc Positions in computational epigenetics and non-coding RNA analysis (#CNPD08)
bioinformatician job rna-seq chipseq gsea python Job
6.5 years ago l.brown ▴ 10
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Python functionality feature request
python bioconductor
updated 6.5 years ago by 25k • written 6.5 years ago by • 0
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Job: Bioinformatics Engineer / Data Analyst
python bio ngs linux Job
6.8 years ago EMBL Recruitment • 0
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Job: Full-time bioinformatics instructor position at Fred Hutch
R shell Python SQL Job
7.0 years ago ematsen ▴ 20
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Job: Summer Studentships in Data Science (Computational Cancer Biology) at the University of Cambridge
R python deep learning machine learning cancer genomics Job
7.8 years ago Shamith.Samarajiwa ▴ 180
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Job: Data Scientist / Bioinformatician / Statistician at University of California
R python stats bioinformatics perl Job
8.5 years ago clif.duhn • 0
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Job: Bioinformatics Programmer (Statistician) at University of California at San Francisco
R bioinformatician job Perl Python statistics Job
8.8 years ago • updated 8.5 years ago clif.duhn • 0
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Job: Harvard Medical School: Biomedical Data Scientist Postdoctoral Associate
biomedical informatics data science python SQL Job
9.0 years ago Doe, Aimee ▴ 40
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Convertion of indexed bam file to tsv file format
python samtools
updated 9.3 years ago by 16k • written 9.3 years ago by • 0
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DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq splicing python SAM
9.3 years ago Fiona ▴ 70
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seq2pathway error on Mac OS X
seq2pathway error python mac os x
9.3 years ago termanini ▴ 10
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Job: Calling all Clinical Genomic Scientist
computational biology genomics genetics Python java Job
9.6 years ago careers • 0
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Comment: Problems with oarfish + tximport + swish by Im • 0
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Answer: How to sort negative log2FC or FC in RNAseq for GSEA? by ATpoint ★ 4.6k
GSEA asks whether there are general shifts in gene expression towards certain terms. Hence, you would not split your results tables but ord…
Comment: EdgeR Biological CVs by James • 0
Thank you Gordon and Joseph. I presume question (1) would be answered by using a prior G0 of 0? For question (2), I was expecting a biolog…
Comment: EdgeR Biological CVs by Joseph ▴ 10
I believe the published study provides answers to your questions. Yunshun Chen and Pedro Baldoni's recent papers on edgeR may also be of in…
Answer: EdgeR Biological CVs by Gordon Smyth 52k
I think your questions are answered by the published paper. You might also like to consult recent papers on edgeR by Yunshun Chen and Pedro…
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Answer: EdgeR Biological CVs
Comment: EdgeR Biological CVs
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
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