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TnSeq as ZINB? Alternatives in R?
DESeq2 R edgeR Python TnSeq
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Job: Bioconductor Core developers group opening
R cloud github python git
2.5 years ago Vincent J. Carey, Jr. 6.7k
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Change the interval of bed file
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updated 3.1 years ago by 68k • written 3.1 years ago by • 0
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python and R
snpeff python tophat r RNAseq123
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3.8 years ago Ewa • 0
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DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq python gtf gff3 annotation
4.8 years ago Raito92 ▴ 60
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Load data with rhdf5
rhdf5 python
updated 2.0 years ago by • 0 • written 4.8 years ago by • 0
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Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
R python normalization matrix
updated 5.5 years ago by ▴ 30 • written 5.5 years ago by ▴ 10
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Job: Bioinformatics Analyst II, Genomics Shared Resource (Seattle, WA)
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5.5 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R Python Computational-Biology Cancer Job
5.9 years ago Shamith.Samarajiwa ▴ 180
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Job: Bioinformatics Scientist II
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6.0 years ago careers • 0
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Job: 2 Postdoc Positions in computational epigenetics and non-coding RNA analysis (#CNPD08)
bioinformatician job rna-seq chipseq gsea python Job
6.6 years ago l.brown ▴ 10
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Python functionality feature request
python bioconductor
updated 6.6 years ago by 25k • written 6.6 years ago by • 0
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Job: Bioinformatics Engineer / Data Analyst
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6.9 years ago EMBL Recruitment • 0
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Job: Full-time bioinformatics instructor position at Fred Hutch
R shell Python SQL Job
7.1 years ago ematsen ▴ 20
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Job: Summer Studentships in Data Science (Computational Cancer Biology) at the University of Cambridge
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7.9 years ago Shamith.Samarajiwa ▴ 180
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Job: Data Scientist / Bioinformatician / Statistician at University of California
R python stats bioinformatics perl Job
8.6 years ago clif.duhn • 0
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Job: Bioinformatics Programmer (Statistician) at University of California at San Francisco
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8.9 years ago • updated 8.6 years ago clif.duhn • 0
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Job: Harvard Medical School: Biomedical Data Scientist Postdoctoral Associate
biomedical informatics data science python SQL Job
9.1 years ago Doe, Aimee ▴ 40
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Convertion of indexed bam file to tsv file format
python samtools
updated 9.4 years ago by 16k • written 9.4 years ago by • 0
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DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq splicing python SAM
9.4 years ago Fiona ▴ 70
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seq2pathway error on Mac OS X
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9.4 years ago termanini ▴ 10
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Job: Calling all Clinical Genomic Scientist
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9.7 years ago careers • 0
23 results • Page 1 of 1
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Answer: Plot title for PCA in DESeq2 by ATpoint ★ 4.7k
The function uses ggplot2, so you need `+ ggtitle('title')`. Please take a ggplot2 tutorial for details.
Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0
I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…
Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k
VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…
Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k
It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…
Comment: WGCNA by pammelala304 • 0
Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.
Votes
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: normalizatino of dna methylation EPIC data
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
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