Bioconductor ProteomicsWorkflow

Showing : ProteomicsWorkflow • reset

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547

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ProteomicsWorkflow PSMatch Spectra RforProteomics

updated 10 weeks ago by Laurent Gatto 1.6k • written 12 weeks ago by Jane_Huang • 0

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407

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Proteomics ProteoMM ProteomicsWorkflow Proteome

written 12 months ago by ary.lech ▴ 10

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9.3k

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limma ProteomicsWorkflow

updated 15 months ago by Gordon Smyth 52k • written 3.1 years ago by David Lyon ▴ 340

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962

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Proteomics RforProteomics ProteomicsWorkflow Spectra MassSpectrometryData

updated 17 months ago by Laurent Gatto 1.6k • written 17 months ago by mmvar • 0

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1.1k

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RforProteomics Proteomics ProteomicsWorkflow

updated 17 months ago by Laurent Gatto 1.6k • written 17 months ago by mmvar • 0

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1.2k

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Proteomics ProteoMM ProteomicsWorkflow

updated 17 months ago by mmvar • 0 • written 19 months ago by nkvnambiar • 0

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1.0k

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ProteomicsWorkflow proteomics proteinProfiles

updated 22 months ago by Laurent Gatto 1.6k • written 4.1 years ago by yueli7 ▴ 20

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1.2k

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limma Proteomics ProteomicsWorkflow

updated 2.3 years ago by Gordon Smyth 52k • written 2.4 years ago by samantha.v.goncalves • 0

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1.2k

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msqrob2 ProteomicsWorkflow proteomics

updated 2.5 years ago by Gordon Smyth 52k • written 2.6 years ago by Jane ▴ 10

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910

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proteinProfiles ProteomicsWorkflow ProteomicsAnnotationHubData Proteomics

updated 3.3 years ago by Gordon Smyth 52k • written 3.3 years ago by ALOK • 0

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3.7k

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Proteomics ProteomicsWorkflow UniProt.ws

updated 3.9 years ago by James W. MacDonald 67k • written 3.9 years ago by Dario Strbenac ★ 1.5k

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1.7k

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ProteomicsWorkflow proteomics Proteome

4.1 years ago info ▴ 10

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1.2k

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Proteome ProteomicsWorkflow proteomics

updated 4.1 years ago by swbarnes2 ★ 1.4k • written 4.1 years ago by yueli7 ▴ 20

13 results • Page 1 of 1

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Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by yinhjk602 • 0

https://sprunkiphase4.net/ Sprunki Phase 4 is the latest update in the music rhythm game, offering new beats, characters, and challenges. Y…

Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Votes

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

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