Bioconductor Proteome

Showing : Proteome • reset

votes

431

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Proteomics ProteoMM ProteomicsWorkflow Proteome

written 14 months ago by ary.lech ▴ 10

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1.2k

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SequenceMatching Biostrings DifferentialExpression Proteome

updated 16 months ago by Hervé Pagès 16k • written 16 months ago by nromerov • 0

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639

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Proteome ProtGenerics

written 2.4 years ago by bansalheena10 • 0

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765

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Proteomics Proteome

updated 2.4 years ago by ATpoint ★ 4.6k • written 2.4 years ago by bansalheena10 • 0

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951

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shotgunproteomics Proteome proteomics Proteomics ProteoMM

2.9 years ago ary.lech ▴ 10

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3.7k

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MassSpectrometryData Proteome Database DEP

3.9 years ago tpm • 0

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1.8k

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ProteomicsWorkflow proteomics Proteome

4.2 years ago info ▴ 10

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1.3k

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Proteome ProteomicsWorkflow proteomics

updated 4.2 years ago by swbarnes2 ★ 1.4k • written 4.2 years ago by yueli7 ▴ 20

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2.6k

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Genetics Normalization Proteome DESeq Genetics Normalization Proteome DESeq

updated 13.5 years ago by Davis McCarthy ▴ 20 • written 13.5 years ago by mali salmon ▴ 370

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933

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Proteome Proteome

15.3 years ago Tillinghast, Guy, M.D. ▴ 30

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1.8k

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Proteome Proteome

updated 17.5 years ago by Mª José Nueda ▴ 90 • written 17.5 years ago by simonegri@alice.it ▴ 20

11 results • Page 1 of 1

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Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Votes

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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