Bioconductor Proteome

Showing : Proteome • reset

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407

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Proteomics ProteoMM ProteomicsWorkflow Proteome

written 12 months ago by ary.lech ▴ 10

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1.1k

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SequenceMatching Biostrings DifferentialExpression Proteome

updated 14 months ago by Hervé Pagès 16k • written 14 months ago by nromerov • 0

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627

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Proteome ProtGenerics

written 2.3 years ago by bansalheena10 • 0

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737

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Proteomics Proteome

updated 2.2 years ago by ATpoint ★ 4.6k • written 2.3 years ago by bansalheena10 • 0

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925

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shotgunproteomics Proteome proteomics Proteomics ProteoMM

2.8 years ago ary.lech ▴ 10

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3.6k

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MassSpectrometryData Proteome Database DEP

3.8 years ago tpm • 0

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1.7k

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ProteomicsWorkflow proteomics Proteome

4.1 years ago info ▴ 10

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1.2k

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Proteome ProteomicsWorkflow proteomics

updated 4.1 years ago by swbarnes2 ★ 1.4k • written 4.1 years ago by yueli7 ▴ 20

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2.6k

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Genetics Normalization Proteome DESeq Genetics Normalization Proteome DESeq

updated 13.4 years ago by Davis McCarthy ▴ 20 • written 13.4 years ago by mali salmon ▴ 370

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918

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Proteome Proteome

15.2 years ago Tillinghast, Guy, M.D. ▴ 30

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1.8k

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Proteome Proteome

updated 17.4 years ago by Mª José Nueda ▴ 90 • written 17.4 years ago by simonegri@alice.it ▴ 20

11 results • Page 1 of 1

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

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