Showing : Polyester • reset
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polyester biases
polyester
updated 23 months ago by 43k • written 23 months ago by ▴ 10
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polyester running question
polyester
2.5 years ago Seongwoo Han ▴ 10
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715
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Range value of the dispersion parameters (a1, alpha 0 and sigmad)
polyester dispersion
updated 4.0 years ago by 43k • written 4.0 years ago by • 0
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876
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Error message
polyester
updated 4.2 years ago by 4.1k • written 4.2 years ago by • 0
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2.2k
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RNA-seq read simulation for benchmarking differential expression/splicing variance
polyester simulation RNA-seq syntheticdata
updated 4.4 years ago by 52k • written 4.4 years ago by ▴ 70
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780
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Polyester - simulate_experiment_countmat with gtf
polyester
5.0 years ago liorglic ▴ 10
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Polyester's simulate_experiment man pages / vignette description
polyester
5.5 years ago Michael Love 43k
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Could an experienced user of Polyester help me with some questions?
rna-seq polyester simulation time course
7.3 years ago fa.gholizadeh89 • 0
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1.9k
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How to simulate a count matrix using Polyester
simulation count matrix RNA-seq Polyester
updated 7.4 years ago by ▴ 210 • written 7.4 years ago by • 0
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1.3k
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Polyester - creating simulated reads based on raw count matrix
polyester rnaseq simulation
7.7 years ago sseo2 • 0
2
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1
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1.8k
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polyester: adding noise to RNASeq counts?
rnaseq polyester
updated 8.8 years ago by ▴ 210 • written 8.8 years ago by • 0
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7
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2.2k
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Using Polyester to simulate large number of reads from a large transcriptome
polyester rnaseq
updated 8.9 years ago by ▴ 10 • written 8.9 years ago by • 0
12 results • Page 1 of 1
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Comment: Differing results with DESeq2 by JKim • 0
I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for gene expressio…
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0
That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…
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A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
Answer: ROAST for small sets
Answer: ROAST for small sets
A: conceptual question about FDR, FDR adjusted p-value and q-value
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