Bioconductor PolyPhen

Showing : PolyPhen • reset

votes

606

views

pd.rabgene.1.0.st PolyPhen

updated 3.1 years ago by ATpoint ★ 4.7k • written 3.1 years ago by cyb.95521 • 0

votes

replies

2.4k

views

Transcription HapMap PolyPhen SIFT convert genomes ensemblVEP Transcription HapMap SIFT

updated 11.1 years ago by Valerie Obenchain ★ 6.8k • written 11.1 years ago by Thomas Sandmann ▴ 30

votes

replies

1.4k

views

VariantAnnotation Annotation PolyPhen SIFT annotate VariantAnnotation ensemblVEP Annotation

11.2 years ago Valerie Obenchain ★ 6.8k

votes

replies

1.6k

views

Annotation PolyPhen SIFT Annotation PolyPhen SIFT

updated 11.4 years ago by Valerie Obenchain ★ 6.8k • written 11.4 years ago by Robert Castelo ★ 3.4k

votes

replies

1.2k

views

PolyPhen PolyPhen

11.7 years ago Thomas Maurel ▴ 800

votes

replies

1.7k

views

zebrafish PolyPhen SIFT affy genomes zebrafish PolyPhen SIFT affy genomes

11.9 years ago Thomas Maurel ▴ 800

votes

1.7k

views

miRNA GO Caenorhabditis elegans Sus scrofa zebrafish PolyPhen SIFT miRNA GO Sus scrofa

12.7 years ago Thomas Maurel ▴ 800

7 results • Page 1 of 1

Recent ...

Replies

Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k

> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…

Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k

This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…

Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k

Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…

Comment: How to visualize these pathways using pathview by ingrid.h • 0

Yes I have seen it, thanks.

Comment: Store Matrix in DataFrame Cell by Dario Strbenac ★ 1.6k

It does not appear to work. > DataFrame(name = "test", value = list(matrix(1:4, ncol = 2))) DataFrame with 2 rows and 3 columns …

Votes

A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo