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PlotCounts DESeq2 - how to plot count s for specific samples?
DESeq2
PlotCounts
19 months ago
annamariabugaj
▴ 10
1
vote
4
replies
2.1k
views
plotCounts to visualize variations of a specific genes along conditions
DESeq2
plotCounts
vst
updated 23 months ago by
Michael Love
42k • written 23 months ago by
Laia
▴ 10
0
votes
2
replies
1.8k
views
How to plot gene counts using plotCounts() with just an individual contrast?
DESeq2
plotCounts
updated 3.4 years ago by
Michael Love
42k • written 3.4 years ago by
elizabethe819
• 0
0
votes
1
reply
1.1k
views
Deseq2 how to get input data for plotCounts for a single gene
deseq2
plotcounts
updated 4.4 years ago by
Michael Love
42k • written 4.4 years ago by
sunthomas
• 0
0
votes
1
reply
1.5k
views
plot statistic values in a DEseq2 plotCounts plot
deseq2
plotCounts
pvalues
RNAseq
updated 4.7 years ago by
Michael Love
42k • written 4.7 years ago by
anne.hoffrichter
• 0
0
votes
3
replies
2.2k
views
Change order of conditions when plotting: plotCounts {DESeq2}
R
deseq2
plotcounts
5.4 years ago
ecg1g15
▴ 30
0
votes
5
replies
1.5k
views
Error DESeq2 plotCounts invalid class DESeqDataSet object undefined class for slot rowRanges GenomicRangesORGRangesList
deseq2
plotCounts
rowRanges
updated 6.1 years ago by
Michael Love
42k • written 6.1 years ago by
I.Castanho
▴ 50
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Hi Maria, so what is the code you are using? By the 3rd way to conduct the analysis do you mean looking at the interaction model from part …
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by
María Calvo
• 0
Hello, in line with the previous questions, when the miRNA-mRNA interaction analysis is performed (3 rd way to conduct the analysis), I obt…
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``` > library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19) > Locations DataFrame with 865859 rows and 3 columns ch…
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Not too familiar with SCT v2. If it also has a point-mass at zero and the non-zero component is roughly-symmetric, then it might work ok w…
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Answer: How to control batch effect if Group and batch are same?
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