Bioconductor Peak

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atac-seq sample size Peak Normalize

7.1 years ago jaime.alvarez.benayas • 0

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diffhic peak

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.8 years ago by hwick1 ▴ 20

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r chipseq encode peak

8.2 years ago Jurat Shahidin ▴ 80

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diffbind peak chipseq

updated 8.6 years ago by Rory Stark ★ 5.2k • written 8.6 years ago by becavin.christophe • 0

4 results • Page 1 of 1

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Comment: GSVA on RNAseq data by Robert Castelo ★ 3.4k

Hi Bob, I have not investigated whether a particular unit of expression works better than others, but using logTPM or logCPM units of expr…

Answer: Store Matrix in DataFrame Cell by James W. MacDonald 68k

Put it in a list and put the list in a column.

Comment: For some reason I can't update BiocManager to 3.20 by James W. MacDonald 68k

Please post output from starting R and then running `sessionInfo()` (as requested by the web form you use to post questions). I get ``` > …

Comment: p-value the same for different contrasts DESeq2 by caroline.zanchi • 0

It would be great if it were possible to do something similar using GlmGamPoi !

Comment: Web accessibility of Bioconductor.org by Sean Davis 21k

Added issue to website github repo: https://github.com/Bioconductor/bioconductor.org/issues/304

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Answer: Store Matrix in DataFrame Cell

Store Matrix in DataFrame Cell

A: how to extract Granges not overlapping with other ganges?

DESeq2 1.20.0 lfcshrink function

A: LIMMA on RT-PCR data

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Popular Question to Robert Castelo ★ 3.4k