Showing : PYTHON • reset
0
votes
2
replies
969
views
TnSeq as ZINB? Alternatives in R?
DESeq2 R edgeR Python TnSeq
updated 2.0 years ago by • 0 • written 2.1 years ago by ▴ 90
1
vote
0
replies
975
views
Job: Bioconductor Core developers group opening
R cloud github python git
2.3 years ago Vincent J. Carey, Jr. 6.7k
0
votes
1
reply
1.1k
views
Change the interval of bed file
mappability bed python
updated 2.9 years ago by 67k • written 2.9 years ago by • 0
0
votes
1
reply
990
views
python and R
snpeff python tophat r RNAseq123
updated 3.4 years ago by ★ 4.0k • written 3.4 years ago by • 0
0
votes
0
replies
1.0k
views
Job: Senior Data Engineer | Poland | remote
AWS BigData Engineer python
3.6 years ago Ewa • 0
1
vote
2
replies
1.8k
views
DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq python gtf gff3 annotation
4.6 years ago Raito92 ▴ 60
1
vote
2
replies
1.5k
views
Load data with rhdf5
rhdf5 python
updated 22 months ago by • 0 • written 4.6 years ago by • 0
2
votes
4
replies
1.3k
views
Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
R python normalization matrix
updated 5.3 years ago by ▴ 30 • written 5.3 years ago by ▴ 10
0
votes
0
replies
1.2k
views
Job: Bioinformatics Analyst II, Genomics Shared Resource (Seattle, WA)
GENOMICS BIOINFORMATICS SEATTLE R PYTHON Job
5.3 years ago Fred Hutch (Recruiting) ▴ 40
0
votes
0
replies
972
views
Job: Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R Python Computational-Biology Cancer Job
5.7 years ago Shamith.Samarajiwa ▴ 180
0
votes
0
replies
1.2k
views
Job: Bioinformatics Scientist II
bioinformatics scientist python computational Job
5.9 years ago careers • 0
0
votes
0
replies
1.2k
views
Job: 2 Postdoc Positions in computational epigenetics and non-coding RNA analysis (#CNPD08)
bioinformatician job rna-seq chipseq gsea python Job
6.4 years ago l.brown ▴ 10
1
vote
1
reply
901
views
Python functionality feature request
python bioconductor
updated 6.4 years ago by 25k • written 6.4 years ago by • 0
0
votes
0
replies
1.4k
views
Job: Bioinformatics Engineer / Data Analyst
python bio ngs linux Job
6.7 years ago EMBL Recruitment • 0
2
votes
0
replies
1.5k
views
Job: Full-time bioinformatics instructor position at Fred Hutch
R shell Python SQL Job
6.9 years ago ematsen ▴ 20
5
votes
0
replies
1.6k
views
Job: Summer Studentships in Data Science (Computational Cancer Biology) at the University of Cambridge
R python deep learning machine learning cancer genomics Job
7.7 years ago Shamith.Samarajiwa ▴ 180
0
votes
0
replies
1.5k
views
Job: Data Scientist / Bioinformatician / Statistician at University of California
R python stats bioinformatics perl Job
8.4 years ago clif.duhn • 0
0
votes
0
replies
2.0k
views
Job: Bioinformatics Programmer (Statistician) at University of California at San Francisco
R bioinformatician job Perl Python statistics Job
8.7 years ago • updated 8.4 years ago clif.duhn • 0
0
votes
0
replies
2.1k
views
Job: Harvard Medical School: Biomedical Data Scientist Postdoctoral Associate
biomedical informatics data science python SQL Job
8.9 years ago Doe, Aimee ▴ 40
5
votes
23
replies
7.0k
views
Convertion of indexed bam file to tsv file format
python samtools
updated 9.2 years ago by 16k • written 9.2 years ago by • 0
0
votes
0
replies
1.6k
views
DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq splicing python SAM
9.2 years ago Fiona ▴ 70
3
votes
4
replies
1.9k
views
seq2pathway error on Mac OS X
seq2pathway error python mac os x
9.3 years ago • updated 9.2 years ago termanini ▴ 10
0
votes
0
replies
1.8k
views
Job: Calling all Clinical Genomic Scientist
computational biology genomics genetics Python java Job
9.5 years ago careers • 0
23 results • Page 1 of 1
Recent ...
Replies
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Hi Tim, Thanks for your reply! Yes, my data is 450K, and it is TCGA methylation data downloaded by TCGAbiolinks. The problem is that I can …
Answer: Error in get_anno_data(ontology) : ontology not supported yet... by Guido Hooiveld ★ 4.1k
Did you check the help page for the function `enrichDO`? Type `?enrichDO`. I am asking, because there it is stated that the argument `ont`…
Comment: Build error on kunpeng2 Linux aarch64 by martin.grigorov ▴ 10
Hi, There was a problem with `icu` and because of that the (r)curl library was not installed. The system/OS curl library is one version ol…
Answer: Standardization of rlog transformed counts before PCA by ATpoint ★ 4.6k
I guess you mean scaling in terms of Z-scoring? There are plenty of posts towards scaling in PCA both here on Bioconductor and in other com…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Tim Peters ▴ 200
Also, re DMR.plot(), yes the understanding is that all DMRs from EPICv2 should be plotted in hg38. I've left that implied for the user sinc…
Votes
Comment: Feature Counts - potential bug with outfile.jcounts
Answer: Feature Counts - potential bug with outfile.jcounts
Comment: Can we get beta values with DMRcate package
Answer: Can we get beta values with DMRcate package
DiffBind giving different results from dba.report() and dba.analyze(..., bRetrieveAnalysis=TRUE)
Awards • All
Popular Question to martin.grigorov ▴ 10
Scholar to James W. MacDonald 67k
Popular Question to Benjamin ▴ 20
Popular Question to María Calvo • 0
Popular Question to Gordon Smyth 52k
Locations • All
Australia, just now
WEHI, Melbourne, Australia, 8 minutes ago
United States, 15 minutes ago
France, 28 minutes ago
The city by the bay, 42 minutes ago
Traffic: 599 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6