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PWMEnrich
•
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0
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replies
666
views
How to interpret difference statistic from the output of the motifDiffEnrichment() function in the PWMEnrich package?
PWMEnrich
5.5 years ago
intregen
• 0
0
votes
0
replies
770
views
makeBackground error message "Sequence only contain N's"
pwmenrich
6.2 years ago
gdeniz
• 0
0
votes
1
reply
840
views
subsetting PWMLognBackground object in the PWMEnrich package
PWMEnrich
6.3 years ago
amanda.joy.price
• 0
0
votes
0
replies
713
views
PWMEnruch: Error in getPromoters(organism)
r
pwmenrich
6.4 years ago
prp291
• 0
0
votes
1
reply
1.9k
views
Convert HOMER motif matrix to pfm?
homer
pwmenrich
updated 7.8 years ago by
Ou, Jianhong
★ 1.3k • written 7.8 years ago by
sarah.blackstone7734
• 0
0
votes
0
replies
1.0k
views
question about motif enrichment analysis using PWMenrich
PWMenrich
7.9 years ago
sekawaiwai2006
▴ 20
2
votes
3
replies
1.8k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 8.3 years ago by
Robert Stojnic
▴ 50 • written 8.3 years ago by
sekawaiwai2006
▴ 20
0
votes
0
replies
1.3k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
8.3 years ago
enricoferrero
▴ 660
0
votes
3
replies
1.5k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb
matchpwm
motif
pwmenrich
pwm
8.6 years ago
vinod.acear
▴ 50
0
votes
1
reply
2.2k
views
non-numeric argument to binary operator error with makeBackground() in PWMEnrich
pwmenrich
MotifDB
updated 8.7 years ago by
Robert Stojnic
▴ 50 • written 8.7 years ago by
elliott77
• 0
2
votes
1
reply
1.1k
views
[PWMEnrich] Enrichment p-values on human sequences
pwmenrich
log
updated 8.9 years ago by
Robert Stojnic
▴ 50 • written 8.9 years ago by
enricoferrero
▴ 660
1
vote
3
replies
1.5k
views
getBackgroundFrequencies for Arabidopsis
pwmenrich
bsgenome
8.9 years ago
oliwindram
▴ 10
0
votes
5
replies
2.5k
views
Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
BSgenome
convert
BSgenome
PWMEnrich
MotifDb
updated 9.8 years ago by
Robert Stojnic
▴ 80 • written 9.8 years ago by
deepti anand
▴ 50
0
votes
0
replies
818
views
PWMEnrich::sequenceReport() and 'res' global variable
PWMEnrich
PWMEnrich
10.0 years ago
enricoferrero
▴ 660
0
votes
8
replies
1.6k
views
plotpfm has been removed in PWMEnrich?
PWMEnrich
PWMEnrich
updated 10.6 years ago by
Robert Stojnic
▴ 80 • written 10.6 years ago by
Fabrice Tourre
▴ 970
0
votes
1
reply
1.2k
views
PWMEnrich binding site position
PWMEnrich
PWMEnrich
updated 10.8 years ago by
Robert Stojnic
▴ 50 • written 10.8 years ago by
Guest User
★ 13k
16 results • Page
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Comment: limma comparison for small sample size and how to get covariance matrix
by
Gordon Smyth
51k
Your MDS plot is better than before, but you are still not following the recommendation for making for making such plots given in the limma…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Also, ``` > result <- mapUniProt( from = "EMBL-GenBank-DDBJ_CDS", to = "UniProtKB", query = c("ACF95883.1") ) > result From…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Ugh, here's the link https://www.uniprot.org/id-mapping/uniprotkb/dd08aa16774d98ef087dc3bd708582012bba49e2/overview?fields=accession%2Cre…
Answer: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
The input should be 'EMBL-GenBank-DDBJ_CDS", as that is a GenBank ID.
Answer: XCMS2 of orbitrap data
by
Elodie
• 0
Hi, I have the same question, I have acquired MS2 data with PRM analysis and inclusion lists of several ions. I have a list of product ion…
Votes
Answer: EPIC array hg38 annotation?
Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
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