Bioconductor PWM

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971

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universalmotif scanning enrich_motifs PWM

2.8 years ago alexandre.blais ▴ 50

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1.9k

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pwm pfm jaspar motifdb

updated 5.9 years ago by Bioconductor Community 0 • written 6.0 years ago by chrisclarkson100 ▴ 50

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921

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pwm motifs jaspar meme motif analysis

6.0 years ago rbronste ▴ 60

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2.5k

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pwm tfbstools jaspar

updated 7.2 years ago by Ge Tan ▴ 20 • written 7.2 years ago by chrisclarkson100 ▴ 50

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1.4k

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biostrings seqlogo pwm

updated 8.0 years ago by Marcel Ramos 700 • written 8.0 years ago by clausdkuhn • 0

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966

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biostrings pwm

8.2 years ago Stefanie Tauber ▴ 40

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1.6k

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motifdb matchpwm motif pwmenrich pwm

9.0 years ago vinod.acear ▴ 50

7 results • Page 1 of 1

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Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?

Answer: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

Yes. Samples in columns and genes in rows.

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by James W. MacDonald 67k

It's not informative except for me to say I was right that it's `getSeq` that is providing the error. It appears that `AddMotifs` is passin…

Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom by James W. MacDonald 67k

This support site is meant to help people with technical questions about using Bioconductor packages. Your question is probably better suit…

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by Paul • 0

This is the traceback I got after running AddMotifs if this is informative? ``` 23: stop(wmsg("trying to load regions beyond the boundaries…

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Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (

Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (

Comment: does anyone how to create rarefaction curves from a phyloseq object?

Answer: ANOVA like approach of edgeR

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