Showing : PGSEA • reset
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Extract info from smc object
PGSEA smc object
7.3 years ago da.de ▴ 30
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PGSEA Steps Using Bioconductor
microarray pgsea
updated 9.2 years ago by ★ 8.2k • written 9.2 years ago by • 0
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Running the GSEA algorithm
Microarray GeneSetEnrichment PGSEA GSEABase GSRI SeqGSEA Microarray GeneSetEnrichment GSRI
updated 11.1 years ago by ★ 13k • written 11.1 years ago by ▴ 70
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Running the GSEA algorithm
Infrastructure PGSEA GSEABase SeqGSEA Infrastructure PGSEA GSEABase SeqGSEA
updated 11.1 years ago by ★ 1.3k • written 11.1 years ago by ▴ 680
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[Rocky] - R code for PGSEA package to identify differentially expressed genes
GO affy limma GLAD PGSEA GSEABase GO affy limma GLAD PGSEA GSEABase
13.2 years ago Valerie Obenchain ★ 6.8k
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PGSEA and smcPlot
GO hgu133plus2 PGSEA GO hgu133plus2 PGSEA
13.7 years ago Valerie Obenchain ★ 6.8k
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PGSEA and smcPlot
GO hgu133plus2 PGSEA GO hgu133plus2 PGSEA
13.8 years ago Iain Gallagher ▴ 930
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PGSEA and Ruuid
Ruuid PGSEA Ruuid PGSEA
16.3 years ago Daniel Klevebring ▴ 80
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Loading the PGSEA package.
PGSEA PGSEA
updated 16.3 years ago by ▴ 90 • written 16.3 years ago by ▴ 20
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a couple of questions on PGSEA package and GSEA
PGSEA PGSEA
updated 16.7 years ago by ▴ 210 • written 16.7 years ago by ★ 1.2k
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ENTREZ identifiers for PGSEA
GO lumi PGSEA GO lumi PGSEA
updated 16.8 years ago by ▴ 90 • written 16.8 years ago by ▴ 370
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PGSEA question
probe PGSEA probe PGSEA
updated 17.2 years ago by ▴ 210 • written 17.2 years ago by ▴ 70
12 results • Page 1 of 1
Recent ...
Replies
Comment: Intepretation of results by Tom • 0
[Locksmith Wombwell][1] I have been interested in using AUCell as a way to determine significantly enriched pathways in my single cell spat…
Comment: Gene Ontology (GO) Analysis by Tom • 0
[Locksmith near me][1] Hello, I'm learning about Gene Ontology analysis. I'm trying to understand the difference between the hyperGTest fun…
Comment: DiffBind; Error: No sites have activity greater than filter value by etiennedanis • 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
Awards • All
Popular Question to Dario Strbenac ★ 1.6k
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Autobiographer to Paul Harrison ▴ 100
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