updated 21 months ago by
James W. MacDonald
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written 21 months ago by
manuelsokolov
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Comment: error in ChAMP loading file
by
barkerxavierr
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0
You have saved your pd object as 'SampleSheet', which is not what champ.load is reading in (it's finding the semi-colon separated file call…
Answer: DiffBind - question on the use of filtered or unfiltered input data
by
apkffh4x
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0
Yes, you can use HR peaks as input to DiffBind, especially if your goal is high-confidence differential binding, but using all peaks provid…
Answer: Log2foldchange strange behavior
by
ATpoint
★
4.8k
The `results()` output you show is perfectly in line with the oputput of `plotCounts()`, hence it is not a DESeq2 issue. UBE3A is higher in…
Comment: DeSeq Strategies for run to run Replication
by
i.c.denhond
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0
Dear Michael,
could you please comment on how to properly apply a vst transformation to a new dataset (in this case, left-out samples)? I …
Comment: Log2foldchange strange behavior
by
RambakKulit
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0
Okay, I'm attaching those now. Just to provide a bit more context for the results below: I downloaded both count and TPM data from the GTEx…
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