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Answer: ANOVA like approach of edgeR
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You need to clarify whether interactions are present for the two factors in your study.
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GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
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You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Comment: Help with RSEM counts: do I transpose matrix?
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NB
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Thank you.
If I have questions about QC/normalization, do I ask them here or ask a new question?
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