Bioconductor PCAtools

Showing : PCAtools • reset

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108

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COTAN PCAtools

3 months ago Silvia • 0

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914

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DESeq2 eigencorplot PCAtools

11 months ago BioinfGuru ▴ 70

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558

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DESeq2 PCAtools

updated 12 months ago by Michael Love 43k • written 12 months ago by Aaliya • 0

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2.2k

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DESeq2 RSTUDIO PCAtools

updated 12 months ago by swbarnes2 ★ 1.4k • written 12 months ago by Aaliya • 0

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1.9k

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edgeR PCAtools

written 13 months ago by Fabian • 0

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5.5k

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ellipse RNAseq PCAtools

updated 2.1 years ago by CP • 0 • written 3.9 years ago by elizabethe819 • 0

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1.8k

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Biplot FactoMineR proteomics PCAtools ellipse

updated 2.3 years ago by Kevin Blighe ★ 4.0k • written 2.3 years ago by M Tuhin • 0

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illumina PCAtools PCA

updated 2.4 years ago by Kevin Blighe ★ 4.0k • written 2.4 years ago by ilaria.debenedictis • 0

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1.1k

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PCAtools bioconductor

updated 2.8 years ago by James W. MacDonald 68k • written 2.8 years ago by pterry • 0

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2.1k

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PCAtools pcaExplorer pcaMethods

updated 2.8 years ago by Federico Marini ▴ 180 • written 2.8 years ago by m610110001 • 0

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3.8k

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PCAtools edgeR pcaExplorer RNASeq RNAseq123

3.0 years ago Alan • 0

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1.2k

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PCAtools

4.1 years ago luca.s ▴ 50

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3.7k

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PCAtools

updated 4.2 years ago by Kevin Blighe ★ 4.0k • written 4.2 years ago by Terra • 0

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4.1k

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biplot PCA RNASeq PCAtools

updated 4.4 years ago by Kevin Blighe ★ 4.0k • written 4.4 years ago by mschmidt ▴ 10

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2.3k

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PCAtools biplot DESeq2 RNASeq PCA

updated 4.4 years ago by Kevin Blighe ★ 4.0k • written 4.4 years ago by ecg1g15 ▴ 30

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1.9k

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PCATools

updated 4.5 years ago by Kevin Blighe ★ 4.0k • written 4.5 years ago by oakhamwolf • 0

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2.2k

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EDA pcaExplorer PCAtools PCA

updated 3.4 years ago by Miguel ▴ 20 • written 4.7 years ago by k.vitting.seerup ▴ 120

17 results • Page 1 of 1

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Comment: CluserProfiler message "No gene can be mapped" by Carolina • 0

There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…

Comment: Differing results with DESeq2 by JKim • 0

My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …

Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k

Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…

Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k

This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…

Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80

Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…

Votes

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

How to remove X & Y chromosome genes from RNAseq data

Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?

A: Unbalanced experiment with multiple samples from each patient.

A: Understanding contrasts limma

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Autobiographer to Paul Harrison ▴ 100

Popular Question to mohammedtoufiq91 ▴ 10