Bioconductor PCAtools

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655

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DESeq2 eigencorplot PCAtools

7 months ago BioinfGuru ▴ 70

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446

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DESeq2 PCAtools

updated 7 months ago by Michael Love 43k • written 8 months ago by Aaliya • 0

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1.4k

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DESeq2 RSTUDIO PCAtools

updated 8 months ago by swbarnes2 ★ 1.4k • written 8 months ago by Aaliya • 0

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1.3k

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edgeR PCAtools

updated 8 months ago by Gordon Smyth 52k • written 8 months ago by Fabian • 0

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4.8k

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ellipse RNAseq PCAtools

updated 20 months ago by CP • 0 • written 3.6 years ago by elizabethe819 • 0

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1.5k

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Biplot FactoMineR proteomics PCAtools ellipse

updated 23 months ago by Kevin Blighe ★ 4.0k • written 23 months ago by M Tuhin • 0

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1.3k

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illumina PCAtools PCA

updated 2.1 years ago by Kevin Blighe ★ 4.0k • written 2.1 years ago by ilaria.debenedictis • 0

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1.1k

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PCAtools bioconductor

updated 2.4 years ago by James W. MacDonald 67k • written 2.4 years ago by pterry • 0

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1.6k

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PCAtools pcaExplorer pcaMethods

updated 2.5 years ago by Federico Marini ▴ 180 • written 2.5 years ago by m610110001 • 0

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3.4k

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PCAtools edgeR pcaExplorer RNASeq RNAseq123

2.7 years ago Alan • 0

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1.1k

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PCAtools

3.7 years ago luca.s ▴ 50

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3.3k

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PCAtools

updated 3.9 years ago by Kevin Blighe ★ 4.0k • written 3.9 years ago by Terra • 0

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3.7k

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biplot PCA RNASeq PCAtools

updated 4.0 years ago by Kevin Blighe ★ 4.0k • written 4.0 years ago by mschmidt ▴ 10

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2.2k

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PCAtools biplot DESeq2 RNASeq PCA

updated 4.1 years ago by Kevin Blighe ★ 4.0k • written 4.1 years ago by ecg1g15 ▴ 30

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1.7k

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PCATools

updated 4.2 years ago by Kevin Blighe ★ 4.0k • written 4.2 years ago by oakhamwolf • 0

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2.0k

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EDA pcaExplorer PCAtools PCA

updated 3.0 years ago by Miguel ▴ 20 • written 4.3 years ago by k.vitting.seerup ▴ 120

16 results • Page 1 of 1

Recent ...

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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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