Bioconductor PCAtools

Showing : PCAtools • reset

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COTAN PCAtools

2 days ago Silvia • 0

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696

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DESeq2 eigencorplot PCAtools

8 months ago BioinfGuru ▴ 70

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472

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DESeq2 PCAtools

updated 8 months ago by Michael Love 43k • written 9 months ago by Aaliya • 0

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1.5k

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DESeq2 RSTUDIO PCAtools

updated 9 months ago by swbarnes2 ★ 1.4k • written 9 months ago by Aaliya • 0

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1.4k

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edgeR PCAtools

written 9 months ago by Fabian • 0

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4.9k

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ellipse RNAseq PCAtools

updated 21 months ago by CP • 0 • written 3.7 years ago by elizabethe819 • 0

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1.6k

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Biplot FactoMineR proteomics PCAtools ellipse

updated 2.0 years ago by Kevin Blighe ★ 4.0k • written 2.0 years ago by M Tuhin • 0

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1.4k

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illumina PCAtools PCA

updated 2.2 years ago by Kevin Blighe ★ 4.0k • written 2.2 years ago by ilaria.debenedictis • 0

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1.1k

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PCAtools bioconductor

updated 2.5 years ago by James W. MacDonald 67k • written 2.5 years ago by pterry • 0

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1.7k

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PCAtools pcaExplorer pcaMethods

updated 2.6 years ago by Federico Marini ▴ 180 • written 2.6 years ago by m610110001 • 0

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3.4k

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PCAtools edgeR pcaExplorer RNASeq RNAseq123

2.8 years ago Alan • 0

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1.1k

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PCAtools

3.8 years ago luca.s ▴ 50

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3.4k

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PCAtools

updated 4.0 years ago by Kevin Blighe ★ 4.0k • written 4.0 years ago by Terra • 0

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3.8k

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biplot PCA RNASeq PCAtools

updated 4.1 years ago by Kevin Blighe ★ 4.0k • written 4.1 years ago by mschmidt ▴ 10

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2.2k

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PCAtools biplot DESeq2 RNASeq PCA

updated 4.2 years ago by Kevin Blighe ★ 4.0k • written 4.2 years ago by ecg1g15 ▴ 30

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1.8k

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PCATools

updated 4.3 years ago by Kevin Blighe ★ 4.0k • written 4.3 years ago by oakhamwolf • 0

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2.0k

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EDA pcaExplorer PCAtools PCA

updated 3.1 years ago by Miguel ▴ 20 • written 4.4 years ago by k.vitting.seerup ▴ 120

17 results • Page 1 of 1

Recent ...

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Answer: Error compiling Rbowtie2 in R-4.4 (Bioconductor 3.20 and probably 3.19) by ja.garcia • 0

It has been fixed by the Rbowtie2 maintainers in version 2.12.2. Thank you for the quick fix!

Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by Amora • 0

You did a great job giving an overview.....[slope][1] better than the bioconductor group! [1]: https://slopeio.org

Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Hi Gordon, Thank you very much for your answer. Actually the variable X is the age, which I am also interested in. Somehow, age and V1 are…

Answer: SingleCellExperiment convenience function for metadata+expression? by Peter Hickey ▴ 750

Hi Sarah, `scuttle::makePerCellDF()` / `scuttle::makePerFeatureDF()` and `scater::ggcells()` / `scater::ggfeatures()`, which build upon th…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by QN ▴ 10

Thank you ATpoint for your response! In the result of GSEA, like you indicated, there will be gene sets that have positive NES and gene se…

Votes

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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