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PCAtools
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How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2
eigencorplot
PCAtools
6 months ago
BioinfGuru
▴ 70
0
votes
2
replies
424
views
PCA plot suggestions
DESeq2
PCAtools
updated 6 months ago by
Michael Love
42k • written 7 months ago by
Aaliya
• 0
0
votes
7
replies
1.2k
views
DESeq2 output used for PCA plot on R studio
DESeq2
RSTUDIO
PCAtools
updated 7 months ago by
swbarnes2
★ 1.4k • written 7 months ago by
Aaliya
• 0
3
votes
5
replies
1.1k
views
Differing results from plotMDS and PCAtools
edgeR
PCAtools
updated 7 months ago by
Gordon Smyth
51k • written 7 months ago by
Fabian
• 0
4
votes
8
replies
4.7k
views
Interpreting ellipses in PCAtools for bulk RNAseq
ellipse
RNAseq
PCAtools
updated 19 months ago by
CP
• 0 • written 3.5 years ago by
elizabethe819
• 0
1
vote
3
replies
1.5k
views
Adding ellipse in PCAtools biplot
Biplot
FactoMineR
proteomics
PCAtools
ellipse
updated 22 months ago by
Kevin Blighe
★ 4.0k • written 22 months ago by
M Tuhin
• 0
1
vote
1
reply
1.3k
views
PCA input data from DRAGEN RNA pipeline
illumina
PCAtools
PCA
updated 2.0 years ago by
Kevin Blighe
★ 4.0k • written 2.0 years ago by
ilaria.debenedictis
• 0
0
votes
1
reply
1.0k
views
Attempt to install bioconductor 3.15, PCAtools
PCAtools
bioconductor
updated 2.3 years ago by
James W. MacDonald
67k • written 2.3 years ago by
pterry
• 0
0
votes
3
replies
1.6k
views
I got error when visualizing my PCA
PCAtools
pcaExplorer
pcaMethods
updated 2.4 years ago by
Federico Marini
▴ 180 • written 2.4 years ago by
m610110001
• 0
5
votes
6
replies
3.2k
views
Large difference in PCA plot based on LCPM (log counts per million) and VST (variance stabilizing transformations)
PCAtools
edgeR
pcaExplorer
RNASeq
RNAseq123
2.6 years ago
Alan
• 0
3
votes
2
replies
1.1k
views
PCAtools lables missing or out of the plot
PCAtools
3.7 years ago
luca.s
▴ 50
3
votes
3
replies
3.2k
views
PCAtools - change colour of points
PCAtools
updated 3.8 years ago by
Kevin Blighe
★ 4.0k • written 3.8 years ago by
Terra
• 0
3
votes
15
replies
3.6k
views
How to ellipse a subset of data PCA biplot?
biplot
PCA
RNASeq
PCAtools
updated 3.9 years ago by
Kevin Blighe
★ 4.0k • written 3.9 years ago by
mschmidt
▴ 10
0
votes
1
reply
2.1k
views
Perform a biplot from pcaData and coldata in DESeq2, maybe PCAtools?
PCAtools
biplot
DESeq2
RNASeq
PCA
updated 4.0 years ago by
Kevin Blighe
★ 4.0k • written 4.0 years ago by
ecg1g15
▴ 30
1
vote
3
replies
1.7k
views
PCATools: is it possible to output a single legend when using pairsplot()?
PCATools
updated 4.1 years ago by
Kevin Blighe
★ 4.0k • written 4.1 years ago by
oakhamwolf
• 0
2
votes
4
replies
1.9k
views
Comparing discrete variable to PCA
EDA
pcaExplorer
PCAtools
PCA
updated 2.9 years ago by
Miguel
▴ 20 • written 4.3 years ago by
k.vitting.seerup
▴ 120
16 results • Page
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Answer: Unlocking Potential: NURS FPX Strategies and Insights
by
efsane_kral2000
• 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights
by
efsane_kral2000
• 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR
by
Gordon Smyth
51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data
by
Melisa Tecik
• 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data
by
James W. MacDonald
67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
Votes
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
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Fred Hutch (Recruiting)
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Gordon Smyth
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67k
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