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PCATools
•
reset
0
votes
0
replies
34
views
Problem with PCAtool as dependencie
COTAN
PCAtools
13 days ago
Silvia
• 0
1
vote
2
replies
711
views
How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2
eigencorplot
PCAtools
8 months ago
BioinfGuru
▴ 70
0
votes
2
replies
487
views
PCA plot suggestions
DESeq2
PCAtools
updated 9 months ago by
Michael Love
43k • written 9 months ago by
Aaliya
• 0
0
votes
7
replies
1.6k
views
DESeq2 output used for PCA plot on R studio
DESeq2
RSTUDIO
PCAtools
updated 9 months ago by
swbarnes2
★ 1.4k • written 9 months ago by
Aaliya
• 0
3
votes
6
replies
1.5k
views
Differing results from plotMDS and PCAtools
edgeR
PCAtools
written 10 months ago by
Fabian
• 0
4
votes
8
replies
5.0k
views
Interpreting ellipses in PCAtools for bulk RNAseq
ellipse
RNAseq
PCAtools
updated 22 months ago by
CP
• 0 • written 3.7 years ago by
elizabethe819
• 0
1
vote
3
replies
1.6k
views
Adding ellipse in PCAtools biplot
Biplot
FactoMineR
proteomics
PCAtools
ellipse
updated 2.0 years ago by
Kevin Blighe
★ 4.0k • written 2.0 years ago by
M Tuhin
• 0
1
vote
1
reply
1.4k
views
PCA input data from DRAGEN RNA pipeline
illumina
PCAtools
PCA
updated 2.2 years ago by
Kevin Blighe
★ 4.0k • written 2.2 years ago by
ilaria.debenedictis
• 0
0
votes
1
reply
1.1k
views
Attempt to install bioconductor 3.15, PCAtools
PCAtools
bioconductor
updated 2.5 years ago by
James W. MacDonald
67k • written 2.5 years ago by
pterry
• 0
0
votes
3
replies
1.7k
views
I got error when visualizing my PCA
PCAtools
pcaExplorer
pcaMethods
updated 2.6 years ago by
Federico Marini
▴ 180 • written 2.6 years ago by
m610110001
• 0
5
votes
6
replies
3.5k
views
Large difference in PCA plot based on LCPM (log counts per million) and VST (variance stabilizing transformations)
PCAtools
edgeR
pcaExplorer
RNASeq
RNAseq123
2.8 years ago
Alan
• 0
3
votes
2
replies
1.1k
views
PCAtools lables missing or out of the plot
PCAtools
3.9 years ago
luca.s
▴ 50
3
votes
3
replies
3.4k
views
PCAtools - change colour of points
PCAtools
updated 4.0 years ago by
Kevin Blighe
★ 4.0k • written 4.0 years ago by
Terra
• 0
3
votes
15
replies
3.8k
views
How to ellipse a subset of data PCA biplot?
biplot
PCA
RNASeq
PCAtools
updated 4.1 years ago by
Kevin Blighe
★ 4.0k • written 4.1 years ago by
mschmidt
▴ 10
0
votes
1
reply
2.2k
views
Perform a biplot from pcaData and coldata in DESeq2, maybe PCAtools?
PCAtools
biplot
DESeq2
RNASeq
PCA
updated 4.2 years ago by
Kevin Blighe
★ 4.0k • written 4.2 years ago by
ecg1g15
▴ 30
1
vote
3
replies
1.8k
views
PCATools: is it possible to output a single legend when using pairsplot()?
PCATools
updated 4.3 years ago by
Kevin Blighe
★ 4.0k • written 4.3 years ago by
oakhamwolf
• 0
2
votes
4
replies
2.0k
views
Comparing discrete variable to PCA
EDA
pcaExplorer
PCAtools
PCA
updated 3.1 years ago by
Miguel
▴ 20 • written 4.5 years ago by
k.vitting.seerup
▴ 120
17 results • Page
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Answer: Unused arguments error without used arguments in GSVA?
by
Axel Klenk
★ 1.0k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Answer: Restricting differential binding analysis to only TSS-proximal regions
by
Aaron Lun
★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA
by
User3088
• 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function
by
iamin053
• 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Comment: build samplesheet and plot profile
by
yf
• 0
![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
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Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
A: Doubt about the "zero expression" genes or genes with no reads at all in the co
Answer: Unable to install nloptr
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
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