Showing : Opencyto • reset
0
votes
0
replies
212
views
Deprecated Gates- tailgate
openCyto
4 months ago ztflaten • 0
0
votes
0
replies
489
views
OpenCyto polyFunctions
openCyto
18 months ago Albert • 0
0
votes
0
replies
773
views
How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
2.3 years ago Dennis.hinkel • 0
1
vote
1
reply
988
views
creating a NOT gate for gating out a single quadrant in a quadrant gate openCyto
FlowCytometry Opencyto
updated 2.3 years ago by ★ 4.0k • written 2.3 years ago by • 0
0
votes
0
replies
692
views
gate_quad_sequential as parent gate for downstream gating in opencyto CSV template
opencyto FlowCytometry
2.3 years ago Noël • 0
0
votes
0
replies
623
views
openCyto 2.8.0: error in prior_flowclust
prior_flowclust openCyto
2.7 years ago martin.andres • 0
0
votes
2
replies
881
views
openCyto Problem: Registered Gating Function Executes Twice when Called
openCyto register_plugins gs_add_gating_method
4.7 years ago geoffreylewen • 0
0
votes
1
reply
916
views
FlowCore openCyto: problem with summary(result)
flowCore openCyto Summary Result Filter
updated 4.8 years ago by ▴ 310 • written 4.9 years ago by • 0
7
votes
3
replies
1.8k
views
Adding quadGate.tmix to gating set with gs_pop_add
gs_pop_add quadGate openCyto
updated 4.8 years ago by ▴ 310 • written 4.8 years ago by ▴ 30
4
votes
5
replies
1.5k
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace flowCore openCyto flowFrame F-measure
updated 4.9 years ago by ▴ 310 • written 4.9 years ago by • 0
1
vote
5
replies
1.9k
views
custom gatingMethod not functioning / registering as expected (openCyto) (minDensity)
openCyto registerPlugin gatingMethod minDensity
5.5 years ago k.teijgeler • 0
5
votes
11
replies
2.3k
views
polyFunctions gate in OpenCyto 1.20
opencyto polyfunctions polyfunctionsGate
updated 5.7 years ago by ★ 1.3k • written 5.7 years ago by • 0
0
votes
6
replies
1.9k
views
How to select left hand side of mindensity2 gate
openCyto mindensity
updated 6.0 years ago by ★ 1.3k • written 6.0 years ago by ▴ 20
0
votes
7
replies
1.8k
views
RefGate populations switched in OpenCyto 1.20
RefGate OpenCyto
updated 6.1 years ago by ★ 1.3k • written 6.2 years ago by • 0
3
votes
3
replies
2.1k
views
Opencyto - detector name not found in flow data, but pretty sure it's there
opencyto flowcore flow cytometry
updated 6.4 years ago by ★ 1.3k • written 7.3 years ago by ▴ 10
0
votes
4
replies
3.0k
views
Windows 10 openCyto Install: installation path not writeable, unable to update packages: boot, Matrix, mgcv
bioclite openCyto package installation
updated 7.0 years ago by ★ 1.3k • written 7.4 years ago by ▴ 70
0
votes
6
replies
2.1k
views
opencyto Error in .validity_check_alias
opencyto
updated 7.4 years ago by ★ 1.3k • written 7.4 years ago by ▴ 20
2
votes
5
replies
2.2k
views
How to find Geometric Mean from gated Quantibeads
flowworkspace opencyto
updated 7.5 years ago by ★ 1.3k • written 7.5 years ago by ▴ 10
1
vote
5
replies
2.3k
views
Measure Median Fluorescence Intensity in openCyto
opencyto
updated 7.6 years ago by ★ 1.3k • written 7.6 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Fail to load openCyto
opencyto bioconductor
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 10
0
votes
1
reply
2.8k
views
R Session Aborted; R ecountered a fatal error while loading openCyto
opencyto fatal error library
updated 7.6 years ago by ★ 1.3k • written 7.7 years ago by • 0
1
vote
1
reply
1.5k
views
Add flowclust gate to gatingset
opencyto flowclust
updated 7.7 years ago by ★ 1.3k • written 7.7 years ago by ▴ 20
2
votes
1
reply
1.3k
views
openCyto displaying gating panels
opencyto
updated 8.1 years ago by ★ 1.3k • written 8.1 years ago by • 0
2
votes
1
reply
1.2k
views
openCyto working Example: expects {flowWorkspace} but example
opencyto bioconductor opencyto gating
updated 8.1 years ago by ★ 1.3k • written 8.1 years ago by • 0
2
votes
4
replies
1.6k
views
Parsing flowWorkspace data
opencyto R flowworkspace bioconductor
updated 8.2 years ago by ★ 1.3k • written 8.2 years ago by • 0
1
vote
4
replies
1.8k
views
openCyto trouble importing xml file
opencyto bioconductor R
8.2 years ago Rivka • 0
0
votes
1
reply
1.4k
views
using flowIncubator package's function
opencyto flow cytometry R package installation
updated 8.6 years ago by ★ 1.3k • written 8.6 years ago by • 0
1
vote
5
replies
2.1k
views
openCyto - flowclust.2d throws errors
opencyto flow cytometry
updated 8.8 years ago by • 0 • written 8.8 years ago by ▴ 30
0
votes
1
reply
2.6k
views
reading an ".xml" file as FlowJo Workspace file
opencyto gating opencyto flowcore flowworkspace
updated 8.8 years ago by ★ 1.3k • written 8.8 years ago by • 0
1
vote
3
replies
1.8k
views
OpenCyto - getting gate coordinates
opencyto
8.8 years ago Ulrik Stervbo ▴ 30
2
votes
1
reply
2.0k
views
Trouble parsing a workspace in flowWorkspace
flowworkspace opencyto
updated 8.9 years ago by ▴ 10 • written 8.9 years ago by ▴ 10
0
votes
1
reply
2.1k
views
FlowWorkspace and norm2Filter
flowcytometry opencyto flowworkspace flowcore
9.0 years ago Jiang, Mike ★ 1.3k
1
vote
2
replies
1.4k
views
openCyto - samples with low cell counts
flowcytometry opencyto
9.1 years ago Jiang, Mike ★ 1.3k
0
votes
3
replies
2.2k
views
openCyto: compilation failure during installation
opencyto rhdf5 compilation error
9.1 years ago gmirkin • 0
1
vote
9
replies
3.7k
views
Problem with ggcyto/flowWorkspace from GitHub
software error flowworkspace opencyto
9.1 years ago anders.tondell ▴ 30
4
votes
8
replies
3.2k
views
openCyto: usage and visualization of quadGate.tmix / collapsing data for flowClust
flowclust opencyto opencyto gating
updated 9.2 years ago by ▴ 240 • written 9.3 years ago by • 0
0
votes
5
replies
2.3k
views
openCyto fails to load
opencyto bioclite
updated 9.3 years ago by • 0 • written 9.3 years ago by ▴ 20
0
votes
4
replies
1.8k
views
Issues parsing workspace in openCyto
opencyto
9.6 years ago JK ▴ 10
0
votes
0
replies
1.6k
views
openCyto transitional gate
flow cytometry opencyto
9.9 years ago Jiang, Mike ★ 1.3k
0
votes
0
replies
1.5k
views
Re: FlowStats help
flowclust opencyto flowcytometry
9.9 years ago Jiang, Mike ★ 1.3k
5
votes
4
replies
3.5k
views
openCyto: Using combination gates (boolean gates)
opencyto opencyto gating FlowJo
updated 10.1 years ago by ▴ 150 • written 10.1 years ago by ▴ 10
4
votes
1
reply
1.9k
views
News: New Flow Cytometry Data Analysis Framework
flowcore flowcytometry opencyto new News
10.4 years ago Greg Finak ▴ 150
1
vote
0
replies
1.9k
views
Issue with flowDensity on OpenCyto
flowClust openCyto flowDensity flowClust openCyto flowDensity
10.5 years ago Jiang, Mike ★ 1.3k
0
votes
1
reply
1.6k
views
OpenCyto
Cancer eisa openCyto Cancer eisa openCyto
10.7 years ago Jiang, Mike ★ 1.3k
0
votes
0
replies
1.1k
views
Bioconductor Digest, Vol 134, Issue 10
openCyto flowDensity openCyto flowDensity
10.9 years ago Jiang, Mike ★ 1.3k
45 results • Page 1 of 1
Recent ...
Replies
Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies by ATpoint ★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
Awards • All
Popular Question to maltethodberg ▴ 180
Popular Question to abadgerw • 0
Popular Question to Jim Nemesh ▴ 10
Popular Question to Wolfgang Huber ★ 13k
Teacher to James W. MacDonald 68k
Locations • All
USA, Los Angeles, USC, 17 minutes ago
The city by the bay, 50 minutes ago
UPF, Barcelona, Spain, 1 hour ago
Pittsburgh, United States, 1 hour ago
United Kingdom, 2 hours ago
Traffic: 936 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6