Showing : OpenCyto • reset
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Deprecated Gates- tailgate
openCyto
3 months ago ztflaten • 0
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0
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467
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OpenCyto polyFunctions
openCyto
17 months ago Albert • 0
0
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0
replies
732
views
How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
2.2 years ago Dennis.hinkel • 0
1
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1
reply
945
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creating a NOT gate for gating out a single quadrant in a quadrant gate openCyto
FlowCytometry Opencyto
updated 2.2 years ago by ★ 4.0k • written 2.2 years ago by • 0
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0
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662
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gate_quad_sequential as parent gate for downstream gating in opencyto CSV template
opencyto FlowCytometry
2.2 years ago Noël • 0
0
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0
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606
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openCyto 2.8.0: error in prior_flowclust
prior_flowclust openCyto
2.6 years ago martin.andres • 0
0
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2
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850
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openCyto Problem: Registered Gating Function Executes Twice when Called
openCyto register_plugins gs_add_gating_method
4.6 years ago geoffreylewen • 0
0
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1
reply
886
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FlowCore openCyto: problem with summary(result)
flowCore openCyto Summary Result Filter
updated 4.7 years ago by ▴ 310 • written 4.8 years ago by • 0
7
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3
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1.7k
views
Adding quadGate.tmix to gating set with gs_pop_add
gs_pop_add quadGate openCyto
updated 4.7 years ago by ▴ 310 • written 4.7 years ago by ▴ 30
4
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5
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1.5k
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Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace flowCore openCyto flowFrame F-measure
updated 4.7 years ago by ▴ 310 • written 4.7 years ago by • 0
1
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5
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1.8k
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custom gatingMethod not functioning / registering as expected (openCyto) (minDensity)
openCyto registerPlugin gatingMethod minDensity
5.4 years ago k.teijgeler • 0
5
votes
11
replies
2.2k
views
polyFunctions gate in OpenCyto 1.20
opencyto polyfunctions polyfunctionsGate
updated 5.6 years ago by ★ 1.3k • written 5.6 years ago by • 0
0
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6
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1.8k
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How to select left hand side of mindensity2 gate
openCyto mindensity
updated 5.9 years ago by ★ 1.3k • written 5.9 years ago by ▴ 20
0
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7
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1.7k
views
RefGate populations switched in OpenCyto 1.20
RefGate OpenCyto
updated 6.0 years ago by ★ 1.3k • written 6.0 years ago by • 0
3
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3
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2.1k
views
Opencyto - detector name not found in flow data, but pretty sure it's there
opencyto flowcore flow cytometry
updated 6.3 years ago by ★ 1.3k • written 7.2 years ago by ▴ 10
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4
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3.0k
views
Windows 10 openCyto Install: installation path not writeable, unable to update packages: boot, Matrix, mgcv
bioclite openCyto package installation
updated 6.9 years ago by ★ 1.3k • written 7.3 years ago by ▴ 70
0
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6
replies
2.0k
views
opencyto Error in .validity_check_alias
opencyto
updated 7.2 years ago by ★ 1.3k • written 7.2 years ago by ▴ 20
2
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5
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2.1k
views
How to find Geometric Mean from gated Quantibeads
flowworkspace opencyto
updated 7.4 years ago by ★ 1.3k • written 7.4 years ago by ▴ 10
1
vote
5
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2.2k
views
Measure Median Fluorescence Intensity in openCyto
opencyto
updated 7.5 years ago by ★ 1.3k • written 7.5 years ago by ▴ 10
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1
reply
1.0k
views
Fail to load openCyto
opencyto bioconductor
updated 7.5 years ago by 25k • written 7.5 years ago by ▴ 10
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1
reply
2.8k
views
R Session Aborted; R ecountered a fatal error while loading openCyto
opencyto fatal error library
updated 7.5 years ago by ★ 1.3k • written 7.5 years ago by • 0
1
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1
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1.5k
views
Add flowclust gate to gatingset
opencyto flowclust
updated 7.6 years ago by ★ 1.3k • written 7.6 years ago by ▴ 20
2
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1
reply
1.3k
views
openCyto displaying gating panels
opencyto
updated 8.0 years ago by ★ 1.3k • written 8.0 years ago by • 0
2
votes
1
reply
1.2k
views
openCyto working Example: expects {flowWorkspace} but example
opencyto bioconductor opencyto gating
updated 8.0 years ago by ★ 1.3k • written 8.0 years ago by • 0
2
votes
4
replies
1.6k
views
Parsing flowWorkspace data
opencyto R flowworkspace bioconductor
updated 8.1 years ago by ★ 1.3k • written 8.1 years ago by • 0
1
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4
replies
1.8k
views
openCyto trouble importing xml file
opencyto bioconductor R
8.1 years ago Rivka • 0
0
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1
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1.4k
views
using flowIncubator package's function
opencyto flow cytometry R package installation
updated 8.5 years ago by ★ 1.3k • written 8.5 years ago by • 0
1
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5
replies
2.1k
views
openCyto - flowclust.2d throws errors
opencyto flow cytometry
updated 8.7 years ago by • 0 • written 8.7 years ago by ▴ 30
0
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1
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2.5k
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reading an ".xml" file as FlowJo Workspace file
opencyto gating opencyto flowcore flowworkspace
updated 8.7 years ago by ★ 1.3k • written 8.7 years ago by • 0
1
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3
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1.7k
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OpenCyto - getting gate coordinates
opencyto
8.7 years ago Ulrik Stervbo ▴ 30
2
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1
reply
2.0k
views
Trouble parsing a workspace in flowWorkspace
flowworkspace opencyto
updated 8.8 years ago by ▴ 10 • written 8.8 years ago by ▴ 10
0
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1
reply
2.1k
views
FlowWorkspace and norm2Filter
flowcytometry opencyto flowworkspace flowcore
8.8 years ago Jiang, Mike ★ 1.3k
1
vote
2
replies
1.4k
views
openCyto - samples with low cell counts
flowcytometry opencyto
9.0 years ago Jiang, Mike ★ 1.3k
0
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3
replies
2.2k
views
openCyto: compilation failure during installation
opencyto rhdf5 compilation error
9.0 years ago gmirkin • 0
1
vote
9
replies
3.6k
views
Problem with ggcyto/flowWorkspace from GitHub
software error flowworkspace opencyto
9.0 years ago anders.tondell ▴ 30
4
votes
8
replies
3.1k
views
openCyto: usage and visualization of quadGate.tmix / collapsing data for flowClust
flowclust opencyto opencyto gating
updated 9.1 years ago by ▴ 240 • written 9.2 years ago by • 0
0
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5
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2.2k
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openCyto fails to load
opencyto bioclite
updated 9.2 years ago by • 0 • written 9.2 years ago by ▴ 20
0
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4
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1.8k
views
Issues parsing workspace in openCyto
opencyto
9.5 years ago JK ▴ 10
0
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0
replies
1.5k
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openCyto transitional gate
flow cytometry opencyto
9.7 years ago Jiang, Mike ★ 1.3k
0
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0
replies
1.5k
views
Re: FlowStats help
flowclust opencyto flowcytometry
9.8 years ago Jiang, Mike ★ 1.3k
5
votes
4
replies
3.5k
views
openCyto: Using combination gates (boolean gates)
opencyto opencyto gating FlowJo
updated 10.0 years ago by ▴ 150 • written 10.0 years ago by ▴ 10
4
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1
reply
1.9k
views
News: New Flow Cytometry Data Analysis Framework
flowcore flowcytometry opencyto new News
10.3 years ago Greg Finak ▴ 150
1
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0
replies
1.9k
views
Issue with flowDensity on OpenCyto
flowClust openCyto flowDensity flowClust openCyto flowDensity
10.4 years ago Jiang, Mike ★ 1.3k
0
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1
reply
1.6k
views
OpenCyto
Cancer eisa openCyto Cancer eisa openCyto
10.6 years ago • updated 10.5 years ago Jiang, Mike ★ 1.3k
0
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0
replies
1.1k
views
Bioconductor Digest, Vol 134, Issue 10
openCyto flowDensity openCyto flowDensity
10.7 years ago Jiang, Mike ★ 1.3k
45 results • Page 1 of 1
Recent ...
Replies
Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k
Sorry, I cannot follow what you're saying. The two code sequences you show look to be exactly the same.
Answer: Mean variance curve troubleshoot filtering by Gordon Smyth 52k
You could use `filterByExpr()`, as recommended by Law et al (2018) and in the limma and edgeR case studies. However, the main problem wi…
Comment: How do I fix an odd voom plot in a combined dataset? by Gordon Smyth 52k
The fact that you have partial NA coefficients indicates that your merged dataset consists in good part of NAs for a very large number of g…
Comment: How do I fix an odd voom plot in a combined dataset? by 1sunmic2 • 0
Thanks for responding! I did change the code slightly: dge1 <- DGEList(counts = combined_data_counts) keep <- rowSums(cpm(dge1)…
Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0
The estimateGLMRobustDisp() function seems to have an effect on glmQLFit(), even in edgeR 4 (4.4.1). If I use estimateGLMRobustDisp(), like…
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Answer: How do I fix an odd voom plot in a combined dataset?
Answer: How do I fix an odd voom plot in a combined dataset?
Comment: How do I fix an odd voom plot in a combined dataset?
C: How does edgeR cpm function calculate log(CPM) values?
C: How does edgeR cpm function calculate log(CPM) values?
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