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Ontology
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reset
4
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replies
4.3k
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Is there any description available for KEGG Pathway Edge Types
KEGG
SystemsBiology
KEGGgraph
ontology
2.5 years ago
Wuschel
▴ 10
1
vote
0
replies
1.2k
views
adjusted p-values with topGO elim.KS method
topGO
Ontology
DifferentialExpression
2.6 years ago
Kevin Gregory
▴ 10
1
vote
2
replies
1.0k
views
gene ontologies for a set of genes
gene
ontology
3.7 years ago
Bogdan
▴ 670
1
vote
5
replies
1.8k
views
Gene Ontology analysis
ontology
edger
limma
ncbi
organism package
updated 5.1 years ago by
Gordon Smyth
52k • written 5.1 years ago by
babak.loghmani
▴ 20
3
votes
3
replies
1.6k
views
Discrepancies between topGO output and input
go
topGO
gene
ontology
enrichment
updated 5.8 years ago by
James W. MacDonald
68k • written 5.8 years ago by
t.bergmann
• 0
1
vote
1
reply
1.4k
views
News:
Gene Ontology Official Workshop - Montreal, October 16, 2018
gene ontology
go
ontology
bioinformatics
genomics
News
6.6 years ago
laurent.albou
• 0
3
votes
3
replies
1.4k
views
source of GO ontology and GO annotations in Bioconductor for GO.db
GO
ontology
GO.db
updated 6.6 years ago by
apkmirrorproject
• 0 • written 6.6 years ago by
marcinjoachimiak
▴ 10
7 results • Page
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Comment: CluserProfiler message "No gene can be mapped"
by
Carolina
• 0
There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…
Comment: Differing results with DESeq2
by
JKim
• 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE
by
James W. MacDonald
68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation
by
sergisayolspuig
▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Votes
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
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