Showing : Ontology • reset
4
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Is there any description available for KEGG Pathway Edge Types
KEGG SystemsBiology KEGGgraph ontology
2.3 years ago Wuschel ▴ 10
1
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0
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1.2k
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adjusted p-values with topGO elim.KS method
topGO Ontology DifferentialExpression
2.4 years ago Kevin Gregory ▴ 10
1
vote
2
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953
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gene ontologies for a set of genes
gene ontology
3.5 years ago Bogdan ▴ 670
1
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5
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1.7k
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Gene Ontology analysis
ontology edger limma ncbi organism package
updated 4.9 years ago by 52k • written 4.9 years ago by ▴ 20
3
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3
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1.5k
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Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 5.6 years ago by 68k • written 5.6 years ago by • 0
1
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1
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1.4k
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News: Gene Ontology Official Workshop - Montreal, October 16, 2018
gene ontology go ontology bioinformatics genomics News
6.4 years ago laurent.albou • 0
3
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3
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1.3k
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source of GO ontology and GO annotations in Bioconductor for GO.db
GO ontology GO.db
updated 6.4 years ago by • 0 • written 6.4 years ago by ▴ 10
7 results • Page 1 of 1
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Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies by ATpoint ★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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