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geneticinteractions cancer networks machine_learning

21 months ago Colm • 0

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cancer networks genomics epigenomics Job

5.0 years ago • updated 4.9 years ago marschaefer • 0

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WGCNA Networks

updated 5.7 years ago by Peter Langfelder ★ 3.0k • written 5.7 years ago by agustin.gonvi ▴ 20

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wgcna modules coexpression networks

6.7 years ago jol.espinoz ▴ 40

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Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom by James W. MacDonald 67k

This support site is meant to help people with technical questions about using Bioconductor packages. Your question is probably better suit…

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by Paul • 0

This is the traceback I got after running AddMotifs if this is informative? ``` 23: stop(wmsg("trying to load regions beyond the boundaries…

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by James W. MacDonald 67k

You will probably have to ask the Signac people. I don't know exactly what is going on under the hood for `AddMotif`, but the `EnsDb` seems…

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by Paul • 0

Unfortunately I've updated my code with the newest GRCm39 genome, and yet I am still getting the same error.... Is there anything else I ca…

Comment: WGCNA with TPM tables by ATpoint ★ 4.5k

WGCNA is not a Bioconductor package, but generally: If you want to do serious analysis then find the raw data. There is no guarantee what …

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Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (

Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (

Comment: does anyone how to create rarefaction curves from a phyloseq object?

Answer: ANOVA like approach of edgeR

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