Bioconductor Nested

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619

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DESeq2 multifactorial nested

updated 22 months ago by Basti ▴ 780 • written 22 months ago by jd • 0

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1.4k

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nested DESeq2

updated 3.0 years ago by Michael Love 43k • written 3.1 years ago by yampolsk • 0

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1.3k

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deseq2 Phyloseq Nested

updated 4.8 years ago by Michael Love 43k • written 4.8 years ago by mpuli011 • 0

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1.0k

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deseq2 Paired Nested

updated 5.1 years ago by Michael Love 43k • written 5.1 years ago by julia.chariker ▴ 10

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1.2k

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deseq2 nested de

updated 5.2 years ago by Michael Love 43k • written 5.2 years ago by gaio.transposon • 0

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1.5k

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edgeR nested glm glmQLFit

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by jcalis ▴ 10

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2.7k

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edger nested design matrix differential expression

updated 9.9 years ago by Aaron Lun ★ 28k • written 9.9 years ago by Mauve • 0

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2.1k

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edger nested estimatedispersions

10.0 years ago Mauve • 0

8 results • Page 1 of 1

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Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.0k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k

Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…

Comment: Sample-specific methylation values using QSEA by User3088 • 0

Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…

Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

Comment: build samplesheet and plot profile by yf • 0

![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a

Votes

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

A: Doubt about the "zero expression" genes or genes with no reads at all in the co

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

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