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deseq2 nested multifactorial analysis
DESeq2
multifactorial
nested
updated 2.1 years ago by
Basti
▴ 780 • written 2.1 years ago by
jd
• 0
0
votes
3
replies
1.5k
views
Is it possible to specify random nested factor in DEseq2?
nested
DESeq2
updated 3.2 years ago by
Michael Love
43k • written 3.3 years ago by
yampolsk
• 0
0
votes
3
replies
1.4k
views
Nested design- phyloseq_to_deseq
deseq2
Phyloseq
Nested
updated 5.1 years ago by
Michael Love
43k • written 5.1 years ago by
mpuli011
• 0
1
vote
2
replies
1.1k
views
Correct DESeq2 interaction design and results with paired and nested data
deseq2
Paired
Nested
updated 5.3 years ago by
Michael Love
43k • written 5.3 years ago by
julia.chariker
▴ 10
0
votes
3
replies
1.3k
views
DESeq2 - nested samples (individuals) - time course - conditions
deseq2
nested
de
updated 5.4 years ago by
Michael Love
43k • written 5.4 years ago by
gaio.transposon
• 0
4
votes
7
replies
1.6k
views
EdgeR between/within comparisons (3.5) with nested non-balanced data set
edgeR
nested
glm
glmQLFit
updated 6.0 years ago by
Aaron Lun
★ 28k • written 6.0 years ago by
jcalis
▴ 10
1
vote
1
reply
2.8k
views
EdgeR:Calculating differential expression within/between groups in nested designs
edger
nested
design matrix
differential expression
updated 10.2 years ago by
Aaron Lun
★ 28k • written 10.2 years ago by
Mauve
• 0
4
votes
5
replies
2.2k
views
edgeR: estimating dispersion for nested designs
edger
nested
estimatedispersions
10.2 years ago
Mauve
• 0
8 results • Page
1 of 1
Recent ...
Replies
Comment: Module membership vs gene significance result and Modules-trait relationships re
by
Vinaya
• 0
Hi. I am having the same issue, and haven't found a solution still.
Comment: Feature Counts - potential bug with outfile.jcounts
by
Tom
• 0
[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…
Comment: Filtering after DESeq
by
caroline.zanchi
• 0
I am going to try this right now, thanks !
Comment: Bioconductor 3.20 Release Schedule
by
randyprice13102000
• 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
Comment: Filtering after DESeq
by
ATpoint
★ 4.8k
The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …
Votes
Answer: CluserProfiler message "No gene can be mapped"
A: Minfi issue: return code from pthread_create() is 22
Comment: Filtering after DESeq
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
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