Bioconductor NCBI GEO

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NCBI GEO

updated 4.1 years ago by SAn • 0 • written 8.9 years ago by maedakus ▴ 10

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geoquery ncbi geo biobase

6.1 years ago cschot3 • 0

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limma differential gene expression ncbi geo affymetrix microarrays

updated 6.2 years ago by Aaron Lun ★ 28k • written 6.2 years ago by Francesca McGrath • 0

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frma barcode geneexpression gsm ncbi geo

updated 7.1 years ago by Matthew McCall ▴ 830 • written 7.1 years ago by diana.elassal • 0

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limma microarray bioconductor ncbi geo

updated 8.0 years ago by Gordon Smyth 52k • written 8.0 years ago by kevin.m.hao ▴ 10

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geoquery ncbi geo geo data

8.1 years ago fongchunchan ▴ 30

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Comment: PCA of different bacterial species by Jeremy • 0

Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…

Comment: RnBeads::combine() - error? by Urotree • 0

pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…

Comment: RnBeads::combine() - error? by Urotree • 0

![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…

Comment: RnBeads::combine() - error? by Urotree • 0

rnb.set.biseq <- RnBiseqSet( pheno = pheno, sites = sites, meth = meth, covg = NULL, # This can be NULL if coverage …

Answer: How to increase font for gene name and increase arrow size for GVIZ's ( UcscTra by ming • 0

`fontsize` for title font size, `fontsize.group` for gene symbol font size tx.track <- GeneRegionTrack(hg38.gtf, …

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scater/scran with TPMs from Salmon - counts?

A: Full length single-cell RNA-seq - tximport output for downstream analysis

Answer: Understanding tximport working with salmon outputs

Answer: enrichGOgradient color change

How do I fix an odd voom plot in a combined dataset?

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